UFO08122.5prime Sequence
739 bp (738 high quality bases) assembled on 2011-07-17
> UFO08122.5prime
CAGTCGACATGATGAAAATTGTACTCATCAGCGGCAAGCGAAAGTGCGGC
AAGGATTACATATCCGAGAGGCTGCAGCGGAGATTGGGCTCCCGGTCGTG
TATCGTTCGAATCTCAGAGCCCATTAAGTCGGAATGGGCTCGCAAGCTGC
AGTTGGACCTGGACGCTCTCCTCGGTGATGGACCCTACAAGGAGAAGTAC
CGGCGCGACATGATTGTGTGGAGCGACGAGGTGCGGGCCCAGGACTACGG
CTACTTCTGCCGCGTGGCCATGGAGGAGGCGCTGAGTCGCCAGCAGACGC
CCTACATTCTTGTCAGCGATGTGCGGCGCAAGAACGACATCAGGTGGTTC
CGGGAGACTTACGGGCCGGAACGAGTCATCACCTTGCGTCTAACATCCCG
TCCAGAAACGCGGTCTGCACGGGGTTGTACCTTTACCGCAGGAATAGACG
ATGTTCCCTCCGAGTGCGATCTGGATGATCTGGCCGACGGCTTCGACGTG
GTGTTGGCCAACGACGAGGAACTCGACCAGGAGGCCATCGACATTCTGCT
GGATAGGCTGCAGCTGCAGTATCGAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAAACGCCCGGCGGCAACCGAGCCGTTTCT
UFO08122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10268-RA | 1156 | CG10268-RA | 222..788 | 9..575 | 2790 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19579461..19579955 | 575..81 | 2430 | 99.4 | Minus |
| 2L | 23513712 | 2L | 19580057..19580130 | 82..9 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:35:45 has no hits.
UFO08122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:39 Download gff for
UFO08122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10268-RA | 210..791 | 1..583 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:17:21 Download gff for
UFO08122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10268-RA | 215..796 | 1..583 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:12 Download gff for
UFO08122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10268-RA | 215..796 | 1..583 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:12 Download gff for
UFO08122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19579453..19579953 | 83..583 | 98 | <- | Minus |
| 2L | 19580057..19580137 | 1..82 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:17:21 Download gff for
UFO08122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19579453..19579953 | 83..583 | 98 | <- | Minus |
| arm_2L | 19580057..19580137 | 1..82 | 95 | | Minus |
