UFO08127.5prime Sequence
1005 bp (964 high quality bases) assembled on 2011-07-17
> UFO08127.5prime
CAGTCGACATGCCTTTCGTTCCCGTTGAAACCCCCAAGTGCCCCGCGTGC
GGCAAGTCGGTCTACGCTGCCGAGGAGCGCGTTGCCGGAGGCTACAAATT
CCACAAGACCTGCTTCAAGTGCAGCATGTGCAACAAGGCCCTGGACTCGA
CCAACTGCACGGAGCACGAGAAGGAGCTTTTCTGCAAAAACTGCCATGGT
CGCAAATACGGTCCCAAGGGATACGGTTTCGGTGGTGGTGCCGGCTGCCT
GTCCACGGACACTGGCGCCCACTTAAACAGAGAATTCGTTCCGCCCAAGA
TTCCCCCAAAAGCACCCGACGGGCTGGGCTGCCCACGGTGTGGCATATAT
GTGTATGCCGCCGAGCAGATGCTGGCCAGAGGAAAGGGTTACCATCGAAG
GTGCTTTAAGTGCGTGCAATGCAACATGATTCTAGACTCAACTCTTCACT
GTGATGGTCCGGACAAGGACATTTACTGTAGAGGATGTTATGCTCAGAAG
TTTGGGGCCAGGGGTTACGGGCACATCGGCATTTCGTCCTTGGGGTTGAT
GTCCGACATCAGGGATAGCGAGTGGCAAAGCGACATGGCTCCCAAAGCCT
CCATCATAAATGTGGAGCAAATCCAGGCGCCAATCGGAGAAGGATGCCCA
CGTTGTGGCGGCGTAGTATTCGCCGCGGAACAAGTTCTCTCCAAGGGAAG
GAGCTGGCACCGGAAGTGCTTCAAGTGTCGGGACTGCACCAAAACTCTGG
ACTCCATTATCGCGTGCGATGGTCCGGACAATGAGGTCTACTGCAGACTT
GCTATGGCAAGAGGTGGGGACCCCATGGCTACGGATTCGCCTGTGGATCC
AGTTTCCTGCAACCGACGGCATACTGAGGAGAACTGGCATCCGAACGACC
CTTTGTGCCTCCGGACACCCACTCGATCATGGCTCCGGACGGCGAGGGAT
GTCCCCCGATGTGGCGCGACCGGTCTTTGCGCCGTCTGCAGCTGGTACAA
GGAGA
UFO08127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlp60A-RC | 2468 | CG42309-RC | 493..1482 | 9..994 | 4625 | 98.4 | Plus |
Mlp60A-RB | 2058 | CG42309-RB | 83..1072 | 9..994 | 4625 | 98.4 | Plus |
Mlp60A-RE | 440 | CG42309-RE | 83..357 | 9..283 | 1375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24076652..24076947 | 579..872 | 1365 | 99 | Plus |
2R | 25286936 | 2R | 24075449..24075608 | 124..283 | 800 | 100 | Plus |
2R | 25286936 | 2R | 24075223..24075338 | 9..124 | 580 | 100 | Plus |
2R | 25286936 | 2R | 24076181..24076284 | 284..387 | 520 | 100 | Plus |
2R | 25286936 | 2R | 24076501..24076599 | 482..580 | 495 | 100 | Plus |
2R | 25286936 | 2R | 24076344..24076443 | 385..484 | 470 | 98 | Plus |
3R | 32079331 | 3R | 7115504..7115734 | 261..31 | 420 | 78.8 | Minus |
2R | 25286936 | 2R | 24077058..24077163 | 875..981 | 315 | 92.6 | Plus |
3R | 32079331 | 3R | 7114879..7115096 | 861..645 | 275 | 76.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:36:14 has no hits.
UFO08127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:44 Download gff for
UFO08127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlp60A-RB | 73..1079 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:20:51 Download gff for
UFO08127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlp60A-RB | 74..1080 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:23 Download gff for
UFO08127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlp60A-RB | 74..1080 | 1..1004 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:23 Download gff for
UFO08127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24076654..24076950 | 581..874 | 98 | -> | Plus |
2R | 24075214..24075337 | 1..123 | 97 | -> | Plus |
2R | 24075449..24075608 | 124..283 | 100 | -> | Plus |
2R | 24076181..24076283 | 284..386 | 100 | -> | Plus |
2R | 24076346..24076442 | 387..483 | 97 | -> | Plus |
2R | 24076503..24076599 | 484..580 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:20:51 Download gff for
UFO08127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19962737..19962860 | 1..123 | 97 | -> | Plus |
arm_2R | 19962972..19963131 | 124..283 | 100 | -> | Plus |
arm_2R | 19963704..19963806 | 284..386 | 100 | -> | Plus |
arm_2R | 19963869..19963965 | 387..483 | 97 | -> | Plus |
arm_2R | 19964026..19964122 | 484..580 | 100 | -> | Plus |
arm_2R | 19964177..19964473 | 581..874 | 98 | -> | Plus |