UFO08129.5prime Sequence
1140 bp (1013 high quality bases) assembled on 2011-07-17
> UFO08129.5prime
CAGTCGACATGACGCCTGCAATCGTTCTGCTGACTTTTTTAGTAATCCTA
ACCCTGGGATCTTATGGATATTCGCAGCTATTGGATTCAAAATGCATTGC
ATTGTTTCGAATAAGAGTAATTGGTGGTCAGAATGCTCGAAGGACTCCAT
GGATGGCTTACTTGATACGAGATAACAGATTCGCATGTGGCGGCTCACTG
ATTGCCTACCGCTTTGTTCTAACCGCTGCCCATTGTACGAAAATCAACGA
CAACTTATTTGTTAGATTGGGTGAATACGATTCGTCGAGGACAACGGATG
GACAGACTAGAAGCTACAGAGTTGTTTCAATATATCGTCATAAAAACTAT
ATAGATTTTCGAAACCATGATATTGCTGTGCTCAAACTGGATCGCCAAGT
CGTCTACGATGCTTATATACGACCAATTTGCATTCTTTTAAATTCCGGCT
TGCAGTCCCTTGCAAACAGCATACAGAATTTTACTTTAACTGGCTGGGGT
CAGATGGCCCACTATTACAAGATGCCAACTACACTGCAGGAAATGTCCCT
GCGCCGTGTTAGAAATGAGTATTGCGGTGTTCCGAGTCTTTCCATATGTT
GCTGGAATCCCGTGCAGTACGCCTGCTTTGGAGATTCAGGCGGTCCATTG
GGGTCACTTGTGAAATACGGACATAAAACCATATATGTTCAGTTTGGAGT
AACCAACTCCGTGACGGGCAATTGTGATGGCTACAGCTCATATTTGGATC
TCATGAGCTATATGCCCTGGCTTTACCAAACCTTTGTTAAGAAACTGGGT
CGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACAATAAAAACGCCCGGCGCAACC
GAGCGTTCTGAACAATCCAGATGGAGTTCTGAGTTCATTACTGGATTTTA
TCAACAGGGGTCCAGCGAGCTTGGATTTCATTTACGCCCCGGCCTTGCCC
TTCATCTGCCAGTTACTTGTTTTTATTTCATTTAGCATTCTGGCGGCAAT
GGAAGCATCCAAACGCGCTATGATGTGACCTGAATGCCAC
UFO08129.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30098-RA | 809 | CG30098-RA | 1..792 | 9..801 | 3940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16354241..16354630 | 801..411 | 1905 | 99.7 | Minus |
| 2R | 25286936 | 2R | 16355013..16355215 | 211..9 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 16354694..16354848 | 411..257 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 16354906..16354951 | 256..211 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:36:19 has no hits.
UFO08129.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:45 Download gff for
UFO08129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30098-RA | 1..795 | 9..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:21:20 Download gff for
UFO08129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30098-RA | 1..795 | 9..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:25 Download gff for
UFO08129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30098-RA | 1..795 | 9..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:25 Download gff for
UFO08129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16355014..16355223 | 1..210 | 98 | | Minus |
| 2R | 16354694..16354848 | 257..411 | 100 | <- | Minus |
| 2R | 16354906..16354951 | 211..256 | 100 | <- | Minus |
| 2R | 16354237..16354629 | 412..805 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:21:20 Download gff for
UFO08129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12241742..12242134 | 412..805 | 99 | <- | Minus |
| arm_2R | 12242199..12242353 | 257..411 | 100 | <- | Minus |
| arm_2R | 12242411..12242456 | 211..256 | 100 | <- | Minus |
| arm_2R | 12242519..12242728 | 1..210 | 98 | | Minus |
