Clone UFO08201 Report

Search the DGRC for UFO08201

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:82
Well:1
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptGr43a-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08201.5prime Sequence

1008 bp (472 high quality bases) assembled on 2011-07-23

> UFO08201.5prime
CAATCGACATGGAGATATCCCAGCCCAGCATCGGCATCTTCTACATCAGC
AAAGTGCTGGCCCTGGCTCCATATGCTACGGTCCGGAACTCCCAGGGCCG
GGTGGAAATTGGTCGCAGCTGGCTCTTCACTGTATACTCGGCCACATTAA
CGGTGGTTATGGTTTTTCTCACTTATCGGGGTCTCCTGTTCTATGCTAAC
TCCGAAATTCCCGTGCGAATGAAGTCGGCTACGTCGAAGGTGGTGACGGC
CCTGGACGTGTCTGTGGTGGTCATGGCCATTGTATCCGGTGTTTACTGTG
GCCTTTTCAGCCTGAACGACACTCTCGAGCTCAACGATCGACTAAACAAG
ATCGATAATACCCTAAATGCCTACAATAACTTTCGAAGAGATCGATGGCG
AGCCTTGGGCATGGCTGCCGTCTCTCTGCTGGCCATTTCGATTCTGGTCG
GCCTGGATGTAGGGACGTGGATGCGCATTGCCCATGATATGAACATACCT
CATTCGGATACAGAACTCAATGTGCACTGGTACATTCCATTCTATAGTCT
TTACTTCATCCTCACGGGCTTGCAGGTTAACATTGCCAACACAGCCTATG
GACTATGAAGGCGCTTTGGCCGTCTGAACCGAATGCTTTCGAGCAGCTTT
CTTGCACAGAACAATGCAACCAGTGCCATCAAGCCACAAAAGGTCAGCAC
CGTGAAGAACGTTAGCGTAAATCGGCCAGCGATGCCATCGGCACTCCACG
CGAGCCTGACGAAGCTGAACGGCGAAACCTTGCCCTGTGAATCCGCAACC
AAAACAACGGGTTGCTCCTCAAATCCCTGGCGGACAGTCACGAGTCGCTG
GGAAATGTGTCCACCTCTGTCCACTCCTTCGGCATGCGGTCTCTTCATCC
TGATGTCCTGTCTGCTGCACTCGTTGCTACGGCCTACTTCTCTTTCTGAC
TGCTCAGCAGCGGGATTACGCTACTGGAGGCTGCAGATGCTCTTGACTGC
TTTCACTT

UFO08201.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
Gr43a-RA 1449 CG1712-RA 13..1025 9..1008 4405 96.4 Plus
Gr43a-RB 1515 CG1712-RB 13..801 9..797 3765 98.5 Plus
Gr43a-RC 1527 CG1712-RC 13..813 9..797 3635 97 Plus
Gr43a-RB 1515 CG1712-RB 874..1091 803..1008 650 89.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7392144..7392306 511..349 770 98.2 Minus
2R 25286936 2R 7392996..7393149 162..9 755 99.4 Minus
2R 25286936 2R 7391897..7392043 656..510 690 98 Minus
2R 25286936 2R 7391701..7391840 797..658 670 98.6 Minus
2R 25286936 2R 7392372..7392505 350..217 670 100 Minus
2R 25286936 2R 7391563..7391628 867..803 265 97 Minus
2R 25286936 2R 7392878..7392933 217..162 265 98.2 Minus
Blast to na_te.dros performed on 2014-11-27 00:13:35 has no hits.

UFO08201.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:06 Download gff for UFO08201.5prime
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 5..1025 1..1008 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:57 Download gff for UFO08201.5prime
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 5..1025 1..1008 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:20 Download gff for UFO08201.5prime
Subject Subject Range Query Range Percent Splice Strand
Gr43a-RA 5..1025 1..1008 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:20 Download gff for UFO08201.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7391555..7391633 799..873 93 <- Minus
2R 7391700..7391840 658..798 97 <- Minus
2R 7391896..7392039 514..657 97 <- Minus
2R 7392142..7392304 351..513 97 <- Minus
2R 7392372..7392504 218..350 100 <- Minus
2R 7392878..7392932 163..217 98 <- Minus
2R 7392996..7393156 1..162 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:57 Download gff for UFO08201.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3279205..3279345 658..798 97 <- Minus
arm_2R 3279401..3279544 514..657 97 <- Minus
arm_2R 3279060..3279138 799..873 93 <- Minus
arm_2R 3279647..3279809 351..513 97 <- Minus
arm_2R 3279877..3280009 218..350 100 <- Minus
arm_2R 3280383..3280437 163..217 98 <- Minus
arm_2R 3280501..3280661 1..162 96   Minus