UFO08201.5prime Sequence
1008 bp (472 high quality bases) assembled on 2011-07-23
> UFO08201.5prime
CAATCGACATGGAGATATCCCAGCCCAGCATCGGCATCTTCTACATCAGC
AAAGTGCTGGCCCTGGCTCCATATGCTACGGTCCGGAACTCCCAGGGCCG
GGTGGAAATTGGTCGCAGCTGGCTCTTCACTGTATACTCGGCCACATTAA
CGGTGGTTATGGTTTTTCTCACTTATCGGGGTCTCCTGTTCTATGCTAAC
TCCGAAATTCCCGTGCGAATGAAGTCGGCTACGTCGAAGGTGGTGACGGC
CCTGGACGTGTCTGTGGTGGTCATGGCCATTGTATCCGGTGTTTACTGTG
GCCTTTTCAGCCTGAACGACACTCTCGAGCTCAACGATCGACTAAACAAG
ATCGATAATACCCTAAATGCCTACAATAACTTTCGAAGAGATCGATGGCG
AGCCTTGGGCATGGCTGCCGTCTCTCTGCTGGCCATTTCGATTCTGGTCG
GCCTGGATGTAGGGACGTGGATGCGCATTGCCCATGATATGAACATACCT
CATTCGGATACAGAACTCAATGTGCACTGGTACATTCCATTCTATAGTCT
TTACTTCATCCTCACGGGCTTGCAGGTTAACATTGCCAACACAGCCTATG
GACTATGAAGGCGCTTTGGCCGTCTGAACCGAATGCTTTCGAGCAGCTTT
CTTGCACAGAACAATGCAACCAGTGCCATCAAGCCACAAAAGGTCAGCAC
CGTGAAGAACGTTAGCGTAAATCGGCCAGCGATGCCATCGGCACTCCACG
CGAGCCTGACGAAGCTGAACGGCGAAACCTTGCCCTGTGAATCCGCAACC
AAAACAACGGGTTGCTCCTCAAATCCCTGGCGGACAGTCACGAGTCGCTG
GGAAATGTGTCCACCTCTGTCCACTCCTTCGGCATGCGGTCTCTTCATCC
TGATGTCCTGTCTGCTGCACTCGTTGCTACGGCCTACTTCTCTTTCTGAC
TGCTCAGCAGCGGGATTACGCTACTGGAGGCTGCAGATGCTCTTGACTGC
TTTCACTT
UFO08201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gr43a-RA | 1449 | CG1712-RA | 13..1025 | 9..1008 | 4405 | 96.4 | Plus |
Gr43a-RB | 1515 | CG1712-RB | 13..801 | 9..797 | 3765 | 98.5 | Plus |
Gr43a-RC | 1527 | CG1712-RC | 13..813 | 9..797 | 3635 | 97 | Plus |
Gr43a-RB | 1515 | CG1712-RB | 874..1091 | 803..1008 | 650 | 89.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7392144..7392306 | 511..349 | 770 | 98.2 | Minus |
2R | 25286936 | 2R | 7392996..7393149 | 162..9 | 755 | 99.4 | Minus |
2R | 25286936 | 2R | 7391897..7392043 | 656..510 | 690 | 98 | Minus |
2R | 25286936 | 2R | 7391701..7391840 | 797..658 | 670 | 98.6 | Minus |
2R | 25286936 | 2R | 7392372..7392505 | 350..217 | 670 | 100 | Minus |
2R | 25286936 | 2R | 7391563..7391628 | 867..803 | 265 | 97 | Minus |
2R | 25286936 | 2R | 7392878..7392933 | 217..162 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:13:35 has no hits.
UFO08201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:06 Download gff for
UFO08201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr43a-RA | 5..1025 | 1..1008 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:57 Download gff for
UFO08201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr43a-RA | 5..1025 | 1..1008 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:20 Download gff for
UFO08201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gr43a-RA | 5..1025 | 1..1008 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:20 Download gff for
UFO08201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7391555..7391633 | 799..873 | 93 | <- | Minus |
2R | 7391700..7391840 | 658..798 | 97 | <- | Minus |
2R | 7391896..7392039 | 514..657 | 97 | <- | Minus |
2R | 7392142..7392304 | 351..513 | 97 | <- | Minus |
2R | 7392372..7392504 | 218..350 | 100 | <- | Minus |
2R | 7392878..7392932 | 163..217 | 98 | <- | Minus |
2R | 7392996..7393156 | 1..162 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:57 Download gff for
UFO08201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3279205..3279345 | 658..798 | 97 | <- | Minus |
arm_2R | 3279401..3279544 | 514..657 | 97 | <- | Minus |
arm_2R | 3279060..3279138 | 799..873 | 93 | <- | Minus |
arm_2R | 3279647..3279809 | 351..513 | 97 | <- | Minus |
arm_2R | 3279877..3280009 | 218..350 | 100 | <- | Minus |
arm_2R | 3280383..3280437 | 163..217 | 98 | <- | Minus |
arm_2R | 3280501..3280661 | 1..162 | 96 | | Minus |