UFO08202.5prime Sequence
1117 bp (1008 high quality bases) assembled on 2011-07-23
> UFO08202.5prime
CAGTCGACATGGGACAGGGCAAAACAGATCTGGCCAAAGATGAATTCGGA
CGCGTAGCTGCTCGCGACACCCATCAAATAGCCGAGGCTCAACAGCAGAA
GAACGCCAGGCTGCGCGAGGCCTTCAACATATCCGAGTACTTTGTCGAGG
GCAGCAGCTTCGACGGTGATCGCAAGGCGAAGGAGGACCTGGCCAAAAGC
GTGGCTCTCCAAAAGGAACTGGACGCCCAGCGCGAGAGCCTGGCAGCGGC
GGCAGCTGCCGCAGCAGCCGGCAAGGACAAGGAGACCGGGAAGCGGTATG
CCCTAGTGCGTACTCCTTCCCGCGAACGGGATCGCGATGCTGGCGATGCG
GCAGCCAATGGCGACGAACGCGATCATGTCTCCAAGACGGACAAGAAGAA
GCGCAAGAAGCGCGCCAGAGAGAGTTCTTTTCAGTCCTGAGCGCAAGAAG
AAGAAGAAGTCGAAGAAGCACAAGAAAGAGAGGGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAA
CATATCTCATAACCCTTTAGGAAATAGCAGGTTTCCACCGTACACGCCAC
ATCTGCGAATATATGTGTAGAACTGCGGAATTCGTCCTGCTATCACTTCA
GAGCGATGAAACGTTTCAGTGCTCATGGAACGGGTTAACAGTGACTATCA
ATTCACAGCTCACGTCT
UFO08202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7971-RH | 936 | CG7971-RH | 205..679 | 9..484 | 2310 | 99.2 | Plus |
| CG7971-RB | 1187 | CG7971-RB | 205..678 | 9..483 | 2305 | 99.2 | Plus |
| CG7971-RG | 4204 | CG7971-RG | 513..985 | 9..482 | 2300 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1661227..1661592 | 424..59 | 1830 | 100 | Minus |
| 3L | 28110227 | 3L | 1661108..1661159 | 483..432 | 260 | 100 | Minus |
| 3L | 28110227 | 3L | 1663920..1663969 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:13:41 has no hits.
UFO08202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:06 Download gff for
UFO08202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7971-RB | 184..667 | 1..488 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:59 Download gff for
UFO08202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7971-RB | 199..682 | 1..488 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:21 Download gff for
UFO08202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7971-RH | 199..682 | 1..490 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:21 Download gff for
UFO08202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1661108..1661165 | 425..483 | 93 | <- | Minus |
| 3L | 1661227..1661592 | 59..424 | 100 | <- | Minus |
| 3L | 1663920..1663974 | 1..58 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:59 Download gff for
UFO08202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1661227..1661592 | 59..424 | 100 | <- | Minus |
| arm_3L | 1663920..1663974 | 1..58 | 93 | | Minus |
| arm_3L | 1661108..1661165 | 425..483 | 93 | <- | Minus |
