UFO08203.5prime Sequence
1147 bp (1060 high quality bases) assembled on 2011-07-23
> UFO08203.5prime
CAGTCGACATGAGCCGCAACTACAAGGAAGATCAGACCAACGAGGTCGAG
GCGTTGGACTCCATATACTGTGGCGATATGGAGATTCTCGCCACGGAGCC
GCACCACAAATTCCAGATTCCAATTGCCACGGAGGAGTACAGTTCGGAGG
AGCCCGAGAAAGGTCTTGCCTGCAAACTGGTCTTCACATTCACAGCTACC
TATCCGGATGGAGCACCCGTGGTGGAAATCGAGGAGCCAGAAAACTTTGA
GGACATGTTTGAAACGCGCCTCCTGGAACACCTGCAAAAGACAATTGAGG
AGAACCTGGGCATGGAGATGATCTTTTCGCTGGTAAGCAGCGCCCAGGAG
TGGCTGAACGAGCGGTGGGATGAACACAAGTTCCACCAGGAGGAACTGCG
AGAGCAGAAGCTGCGGGAAATCGAAGAGGAGGAACGCAAGAAGTTTGAGG
GCACCCGTGTGACGGTGGAGTCCTTCCTCAAATGGAAGCTCGAATTCGAG
GAGAGCACCGGCATTGCCGCCAAGCGGGAGAAGAACAATGTGTCCAAGAA
GCAGACCGGACGCGAACTCTTTATGTGCGACAACACGCTCAACGATTCGG
ATATCAAGTTCCTCCTGGAGGCGGGTGAAAACATTGAAAATGTCAAAATC
GATGAGACGCTGTTCCAGGATATTGGCGAATTGGATTTGGATGACGATGA
TGATGAGGATTGGGTGCCCGGGGCGGACGACGACGACGATGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCGAACATGGAAGCCATCACAAAC
GGGCATGATGACCTGATCGCAGGCGCATCAGCACCTGGTCGCTGGCTATT
AATATTGCCATGGTAAACCGGGGCGAGAAGTGTCAATTGCACGTTTA
UFO08203.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5515-RD | 922 | CG5515-RD | 109..840 | 9..740 | 3660 | 100 | Plus |
| CG5515-RC | 982 | CG5515-RC | 169..900 | 9..740 | 3660 | 100 | Plus |
| CG5515-RB | 1057 | CG5515-RB | 244..975 | 9..740 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24187806..24188461 | 740..85 | 3280 | 100 | Minus |
| 3R | 32079331 | 3R | 24188516..24188591 | 84..9 | 380 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 367..430 | 373..436 | 122 | 65.6 | Plus |
UFO08203.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:07 Download gff for
UFO08203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5515-RB | 222..959 | 9..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:01 Download gff for
UFO08203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5515-RA | 306..1043 | 9..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:23 Download gff for
UFO08203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5515-RB | 244..981 | 9..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:23 Download gff for
UFO08203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24187800..24188461 | 85..747 | 99 | <- | Minus |
| 3R | 24188516..24188591 | 9..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:01 Download gff for
UFO08203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20014238..20014313 | 9..84 | 100 | | Minus |
| arm_3R | 20013522..20014183 | 85..747 | 99 | <- | Minus |
