UFO08205.5prime Sequence
1165 bp (1072 high quality bases) assembled on 2011-07-23
> UFO08205.5prime
CAGTCGACATGAGCGCACCTGGCATGGACAAGAGAAAACTGTCGACATCT
GGCGACTCGCTTTACGAGATCTTAGGACTTCCGAAGACAGCCACCGGAGA
TGATATTAAAAAGACTTACCGGAAACTCGCACTCAAATACCATCCCGATA
AGAACCCGGACAATGTGGATGCGGCTGATAAGTTCAAGGAAGTCAACCGG
GCCCACTCGATATTGAGCGACCAGACGAAGCGCAACATATACGACAACTA
CGGCTCTTTGGGCTTGTACATAGCCGAGCAGTTTGGCGAGGAGAATGTCA
ACGCATACTTCGTGGTCACTTCACCGGCTGTAAAGGCGGTGGTTATCTGC
TGTGCCGTGATCACTGGATGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTG
CAACTTCTGCTGCGGCAAGTTCAAGCCGCCGGTCAACGAGTCGCACGATC
AGTATTCACATCTGAATCGCCCCGATGGCAATCGGGAGGGCAACGATATG
CCAACGCATCTGGGACAGCCGCCACGCCTTGAGGACGTTGACCTAGACGA
CGTTAACTTGGGTGCGGGCGGAGCCCCCGTTACCTCACAGCCGCGGGAAC
AGGCCGGAGGACAGCCTGTTTTCGCCATGCCGCCGCCCAGTGGAGCCGTG
GGAGTAAACCCCTTCACCGGCGCCCCTGTAGCAGCTAACGAGAATACGTC
GCTAAACACAACGGAGCAGACCACTTACACGCCAGATATGGTTAATCAAA
AATATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATAGCATTCTGCCGAACATGCA
GCCATCACAAACCGGCATGATGACCTGATCGCCCAGCGCATCAGCACCTT
GTCCGCTTGGTATAATATTTGCCATGTGTAAACCGGGCCAGAATTGTCAA
TTGGCCGTAAATCAA
UFO08205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csp-RF | 2028 | CG6395-RF | 372..1118 | 9..755 | 3735 | 100 | Plus |
Csp-RB | 1842 | CG6395-RB | 186..932 | 9..755 | 3735 | 100 | Plus |
Csp-RE | 2895 | CG6395-RE | 186..916 | 9..739 | 3640 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22271558..22271766 | 531..739 | 1030 | 99.5 | Plus |
3L | 28110227 | 3L | 22269572..22269727 | 181..336 | 780 | 100 | Plus |
3L | 28110227 | 3L | 22269353..22269491 | 44..182 | 695 | 100 | Plus |
3L | 28110227 | 3L | 22269787..22269920 | 334..467 | 670 | 100 | Plus |
3L | 28110227 | 3L | 22270914..22270977 | 468..531 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:13:50 has no hits.
UFO08205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:08 Download gff for
UFO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csp-RB | 179..932 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:03 Download gff for
UFO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csp-RB | 179..932 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:24 Download gff for
UFO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csp-RB | 179..932 | 1..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:24 Download gff for
UFO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22269353..22269491 | 44..182 | 100 | -> | Plus |
3L | 22269574..22269726 | 183..335 | 100 | -> | Plus |
3L | 22269789..22269920 | 336..467 | 100 | -> | Plus |
3L | 22270914..22270976 | 468..530 | 100 | -> | Plus |
3L | 22271558..22271762 | 531..735 | 100 | -> | Plus |
3L | 22272369..22272388 | 736..755 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:03 Download gff for
UFO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22265469..22265488 | 736..755 | 100 | == | Plus |
arm_3L | 22262453..22262591 | 44..182 | 100 | -> | Plus |
arm_3L | 22262674..22262826 | 183..335 | 100 | -> | Plus |
arm_3L | 22262889..22263020 | 336..467 | 100 | -> | Plus |
arm_3L | 22264014..22264076 | 468..530 | 100 | -> | Plus |
arm_3L | 22264658..22264862 | 531..735 | 100 | -> | Plus |