UFO08208.5prime Sequence
1130 bp (1023 high quality bases) assembled on 2011-07-23
> UFO08208.5prime
CAGTCGACATGGCCCCCAACGATCCATCGCATCCTGGTGGAAAGTCAACC
GCCGTGGCGATGGCCACCAGCCACACCATCTCATACGTGCAATGCCAGAA
CCTCAAATACAACGTCATTATCCTCGGCTGGCTGGGCGTGATCATCTCCA
CCGTCATCTTGGGCAGCTCGGCGCTGACCATCCACTTTCGTCCGGACATC
GAGCTGCTGCTAAACCAGTGGCCCATGAACTTGGTCCCGGTCGCAGAACA
GCAGCTACTGATCAATTTGTTGACCATCTTTAGCTCCATTGTGTACGGAC
TGTCGCTGATCAACATGGGCGTCAGTCTGCTGCTGCTGATTGGTATTGCC
CGGGACTCAAGCTGCCTAATTTATCCTTGGCTGATCTATCATGGCGTTAT
TTTTGGCTTTGGTCTTTACTTGGGGGTTTTCTACGCGACCGCAGGTCTGT
TCATTGACCTGTCGAGCTTTCTAATGTGTCTTCTGGTGTTCAACCTTGTG
CTGGTTATATTTTATAAGATCTATCACGAGGTCTTCACCCTATTTCGCGT
GATGGAGCAGCTGTCGAAGGATGGCGGAATGGGCGGACTCTACTACCAGG
ATGCGGAGCATGGATGGACTGCGGCTGGGGTTCCCTTTCAACATGTCTAT
GTGCCGCGTCTGCCGATGCAAAAGGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATCAT
TAGCATTCTGCCGACATGGAGCCATCACAAACGGCATGATGAACCTGATC
GCCAGCGGCATCAGCACCTGTCGCTGGATTAAATATTTGCCCATGTGAAC
CGGGGGCGAGAGTTGTCATATTGCCCGTTAATCCAACTGTGACTCACCAG
GATGGCTGAAAACGAAACCAATTCATACCT
UFO08208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13747-RA | 979 | CG13747-RA | 151..818 | 7..674 | 3340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9017965..9018225 | 7..267 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 9018701..9018871 | 504..674 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 9018497..9018648 | 353..504 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 9018290..9018376 | 268..354 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:14:00 has no hits.
UFO08208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:09 Download gff for
UFO08208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13747-RA | 106..781 | 1..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:08 Download gff for
UFO08208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13747-RA | 146..821 | 1..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:28 Download gff for
UFO08208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13747-RA | 146..821 | 1..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:28 Download gff for
UFO08208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9017960..9018225 | 1..267 | 98 | -> | Plus |
| 2R | 9018290..9018375 | 268..353 | 100 | -> | Plus |
| 2R | 9018498..9018648 | 354..504 | 100 | -> | Plus |
| 2R | 9018702..9018874 | 505..678 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:08 Download gff for
UFO08208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4905465..4905730 | 1..267 | 98 | -> | Plus |
| arm_2R | 4905795..4905880 | 268..353 | 100 | -> | Plus |
| arm_2R | 4906003..4906153 | 354..504 | 100 | -> | Plus |
| arm_2R | 4906207..4906379 | 505..678 | 98 | == | Plus |
