UFO08212.5prime Sequence
1014 bp (963 high quality bases) assembled on 2011-07-23
> UFO08212.5prime
CAGTCGACATGGATTCGTCTGAAAGCCAATCGCAAATGGATGACCAAGAT
GCTCGCATACTGCGTCTGCAAAATCTGATCGAAAAGAATATTGAGATAGA
GCAACAAATCGAAAACAACACCATCGGAGAGTCTATCACGGCCATAGAGG
AAATCATTCAGACAGCCAACGATATCAGCAAGGGACATGAAGACCGCCGT
ACAAACTCCACGGAACTTGTCCTGGACACGGAGCTACTGCGTCGCAATTT
CGAAGTTGTGGGAAAAGCTATCCAACATAACACCAACGTCACGGATCGAA
TGGTGGCCACGGCGATCAACGATTTGGTTTTCAAAGAGAGCGAAGAAGAT
TGGGATGCTCTTTGTTCATTGGCTATTCAGTTCGGAAGACCACTCTTCAC
CAATGATAGCATGCTGCCCTTCATAGATGTTACTCCAAAGGTGGTGGTTC
AAAAGCAACGTGCTCCTCGCAAAACGAAATCTCAAGTAGATGAGAAGCGT
CCAGAAAAGAGTGACCAATTGGAACGCAAGGACGAAGGAGCAGCGTCCGT
AACCCACATGCTGAAGCAAATAAGACAAATATATCGAGATGGCAATCAAG
AGCCGATTCCGTACTTTAAACTGATTTGCAATCCAAACAATTTTATGGAC
ACCGTTCAGAACGCTTTGCAACTGTCGTTTCTTGTCAAGGAGAACTATAT
TTCCATCGAAAATGGCGAGGATGGTTTGCCATTGGTTCGCGTTGTGAATT
CCAAATCGGTCGAAAGGAAACGCACCGTCCCAGGCTATTTGTTCCATCGA
TGTTACCTTTTGTGAGAAAATGGTAAAGCACTACAACCTACATGAGCCAA
TGTTAAAAAGACTTCCGGTTAGTGAGAAAGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATATTACACACAACAG
ACGTGAGGTCTACGATGACATGTGAAGCTATCGATGTACGCGTCGTTGTG
TGATGACTAGTGTA
UFO08212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nse4-RC | 1029 | CG13142-RC | 90..959 | 9..879 | 4330 | 99.9 | Plus |
| Nse4-RB | 1383 | CG13142-RB | 90..959 | 9..879 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10440176..10440505 | 486..816 | 1605 | 99.7 | Plus |
| 2L | 23513712 | 2L | 10439669..10439888 | 98..317 | 1100 | 100 | Plus |
| 2L | 23513712 | 2L | 10439945..10440115 | 318..488 | 855 | 100 | Plus |
| 2L | 23513712 | 2L | 10439529..10439619 | 9..99 | 455 | 100 | Plus |
| 2L | 23513712 | 2L | 10440559..10440623 | 815..879 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:13:31 has no hits.
UFO08212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:05 Download gff for
UFO08212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13142-RC | 83..959 | 1..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:55 Download gff for
UFO08212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13142-RB | 83..959 | 1..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:19 Download gff for
UFO08212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nse4-RB | 83..959 | 1..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:19 Download gff for
UFO08212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10439945..10440112 | 318..485 | 100 | -> | Plus |
| 2L | 10439522..10439619 | 1..99 | 95 | -> | Plus |
| 2L | 10439671..10439888 | 100..317 | 100 | -> | Plus |
| 2L | 10440176..10440505 | 486..816 | 99 | -> | Plus |
| 2L | 10440561..10440623 | 817..879 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:55 Download gff for
UFO08212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10439522..10439619 | 1..99 | 95 | -> | Plus |
| arm_2L | 10439671..10439888 | 100..317 | 100 | -> | Plus |
| arm_2L | 10439945..10440112 | 318..485 | 100 | -> | Plus |
| arm_2L | 10440176..10440505 | 486..816 | 99 | -> | Plus |
| arm_2L | 10440561..10440623 | 817..879 | 100 | == | Plus |
