UFO08217.5prime Sequence
1144 bp (1024 high quality bases) assembled on 2011-07-23
> UFO08217.5prime
CAGTCGACATGGAGTTGGCCAAGATGCCGCGGCGCCTGATCTTGCTGGCC
CTGCTCATCTGTTTGCCGGCCATCAGAGGGCAGGCGGAGGAGACATCAAT
ATTAAACAGCAATGGAACAAATGGGCGAGCATTTCAAAGGACTCAATCAA
GGCGCGAGGCATTAATTCCGGCGACAACGCAAATGGCCCAGACGCTGGAC
AAAGCCAGCGCATTTAGGCCAACAATGGCTGCAGCTCTGGATGCAGCGGC
TCCGAATCGCTCCAGCAACAATGTAGCCATTAATAACATTAGCAACAATG
GCGATCAGCGACTGAGGCTGACCGCTGCCCTCGAGGCGAATCTGATTATG
AGCAATCGGAATGTCCAGGAGCAGCACAGCTATAGAATCACGCAGGACAA
CGCCACATCTGCAGCTTCGATTGCCCCGAATGGAACGGCATTTGGGGATG
CCCCCTCAATCCCAATAGGAGTAGCTCCAGCGACAACAACAACAATTGAT
CCTGCCACAACGACGCCAACAACAACAACGAGGCGTACAACACGCCGTCC
GGTGGCAACAACAACGCTGAAGCCACCGCCAACAATAGATGATTACCAGA
CAATAATTAGCCAGGCGGGCACCCATGCCTATCTGCCGTGCAATGTCAAG
CAGCTGGTGAAGAAGCCGATATCCTGGCTGCGGATGAGGGACGGGCACAT
CCTTACCGTAGACCAGACCACCTTCATCGCGGATCAGCGCTTTCAGTCCG
TGTTCTCGCCGAATCCTGAACGTTGGTCCCTCCAGATCAAGTACGTGCAG
CTGAAGGACGAATGAACCTATGAGTGTCAGTGTCCACGGAGCCCAAGGCC
AGTGCCATTGTCCATCTAAAGGATTGTGGAGCCGAAACCGAATTAATTGG
CGAGTCACGCGACATGTGAAGGCCGGAAGTCAAGTGAAATTGCGTTGCAT
AATTAGCCAGGCTCTGGAGCCGCCGCTTTTCATTAATGGTTTTACATCAG
AGCAAATCTTATTTGCATAATCGTCCCGTGGCGTACGGAATTGAACGAAT
CGATCTGCAGCGGAGGTGCAACACCAGGACCACCACCCAAAGACAACAAA
ACCGCAGGACATGACCGACCTAGTCAAGCCAGGAACATCGAAAG
UFO08217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr15-RB | 3474 | CG10095-RB | 499..1607 | 9..1105 | 5090 | 98.1 | Plus |
| dpr15-RA | 3490 | CG10095-RA | 515..1623 | 9..1105 | 5090 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12150371..12150948 | 646..69 | 2890 | 100 | Minus |
| 3R | 32079331 | 3R | 12145246..12145471 | 869..645 | 1065 | 99.1 | Minus |
| 3R | 32079331 | 3R | 12144652..12144831 | 1058..885 | 530 | 92.8 | Minus |
| 3R | 32079331 | 3R | 12156109..12156169 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 145..179 | 1101..1067 | 112 | 80 | Minus |
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 5014..5048 | 1101..1067 | 112 | 80 | Minus |
UFO08217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:13 Download gff for
UFO08217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr15-RA | 508..1629 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:19 Download gff for
UFO08217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr15-RA | 508..1629 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:35 Download gff for
UFO08217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr15-RA | 508..1629 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:35 Download gff for
UFO08217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12144594..12144837 | 880..1110 | 91 | <- | Minus |
| 3R | 12145237..12145471 | 645..879 | 98 | <- | Minus |
| 3R | 12150373..12150947 | 70..644 | 100 | <- | Minus |
| 3R | 12156109..12156176 | 1..69 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:19 Download gff for
UFO08217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7970316..7970559 | 880..1110 | 91 | <- | Minus |
| arm_3R | 7970959..7971193 | 645..879 | 98 | <- | Minus |
| arm_3R | 7976095..7976669 | 70..644 | 100 | <- | Minus |
| arm_3R | 7981831..7981898 | 1..69 | 94 | | Minus |
