UFO08220.5prime Sequence
1131 bp (1017 high quality bases) assembled on 2011-07-23
> UFO08220.5prime
CAGTCGACATGGGTAAACAAAAAATCTACTGTGCGAAATGCACGAAGAAG
TGCTCCGGCGAGGTGCTCCGCGTGGCGGACAACCACTTCCACAAGGCCTG
CTTCCAGTGCTGCCAGTGCAAGAAGTCCCTGGCCACCGGCGGATTCTTCA
CAAAGGACAACGCCTACTATTGCATACCGGACTATCAGCGGCTGTACGGC
ACCAAGTGCGCAAATTGCCAGCAGTATGTGGAGGGCGAGGTGGTCAGCAC
CATGGGCAAGACCTATCACCAGAAGTGCTTCACCTGCTCCAAGTGCAAGC
AGCCCTTCAAGTCGGGCAGTAAGGTGACCAACACCGGAAAGGAGGTGCTT
TGCGAGCAATGCGTCACGGGTGCTCCAGTGTCGCCCAGTCGCCAGGCGAC
GGGTGGAGGCGTCTCCTCGCCAGCTCCTCCGGCGGAGAGTCCGACGAGAG
CCACTGCCCACCAGCAGCACGGCAGTGTGATCTCTCATAAGGCGCACCTC
AAGGAGGACTACGATCCCAATGACTGTGCCGGCTGTGGGGAGCTGCTGAA
GGAGGGCCAGGCACTGGTGGCGTTGGACCGGCAGTGGCATGTCTCTTGTT
TCCGGTGCAAGGCCTGCCAGGCGGTGCTCAATGGGGAGTACATGGGCAAA
GACGCGGTGCCCTACTGCGAGAAGTGCTACCAGAAGGGATTCGGGGTGAA
GTGTGCCTACTGCAGTCGCTTCATTAGCGGCAAGGTGCTCCAGGCGGGCG
ACAACCACCACTTCCATCCGACCTGTGCCCGCTGCACAAAGTGCGGCGAT
CCCTTCGGCGACGGCGAGGAGATGTACCTGCAGGCAGTGCCATCTGGCAT
CCGCGATGCGGTCCGGGTCCCTCCGAGTCCGGCATATTTTGAACGGCGGC
GGAGCACTTCGTCGGTGGTCGGAGGTGCCTCCAATGGCACTTCACAGACA
CTGAATGCGACCGGATGAGCTCAGTGCCCTTAGCGAGATGTTCATTCCGC
TCCAGAACCTCGAGCTTTAATGATCACTTTATCCTCTAGCCGCAGGCACT
ACGACGGTGAGTCGGTCCTTGATCTCGGGAGTACGAACGACCATGCCAGG
ACTTCGGCATTCTAACCTTACGCTATTTGAC
UFO08220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-115a-RJ | 3299 | CG31352-RJ | 465..1563 | 4..1092 | 5025 | 97.9 | Plus |
| Unc-115a-RH | 3176 | CG31352-RH | 465..1563 | 4..1092 | 5025 | 97.9 | Plus |
| Unc-115a-RA | 3278 | CG31352-RA | 465..1563 | 4..1092 | 5025 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9690432..9691105 | 990..322 | 3120 | 99.3 | Minus |
| 3R | 32079331 | 3R | 9698318..9698991 | 990..322 | 3120 | 99.3 | Minus |
| 3R | 32079331 | 3R | 9691161..9691476 | 327..12 | 1580 | 100 | Minus |
| 3R | 32079331 | 3R | 9699047..9699362 | 327..12 | 1580 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 3631..3705 | 789..867 | 143 | 67.1 | Plus |
UFO08220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:13 Download gff for
UFO08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31352-RA | 490..1558 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:21 Download gff for
UFO08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115a-RA | 464..1532 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:37 Download gff for
UFO08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-115a-RA | 464..1532 | 1..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:37 Download gff for
UFO08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9690432..9691103 | 324..990 | 99 | <- | Minus |
| 3R | 9691165..9691479 | 7..323 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:21 Download gff for
UFO08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5516154..5516825 | 324..990 | 99 | <- | Minus |
| arm_3R | 5516887..5517201 | 7..323 | 99 | | Minus |
