UFO08221.5prime Sequence
1110 bp (1022 high quality bases) assembled on 2011-07-23
> UFO08221.5prime
CAGTCGACATGTCCGTGGACTTTATACTGCCCAATCGCAATAAGATCCAA
ACGATTGCCTATGCGAGTGCCAGCAAGAAGTATGTGCCCGGTGGATCGGG
ATCCACCCTGAGCTCCGGATCGGTATCGGCATCGGGTGCCGACTTGCAGA
GCTGGCGACGACCCAAGCCCAGGACCTCCGGAAAGGTGAAGTTCGATGAT
AAATCCCCGCTGACTGCCAGTTCGGTGCTAAAAAATGCCAATGGAAATGG
CCTGGGAACTGGAGGCAAGTCACCTCTCAAATCGCTGGCCAAAAGGAACT
CGCGTTCAATTCTCAAGCGGGAGATCATCGATCTGGACGACGAGGATGGC
GAGGAGCAGGAGGATCAGCTCTGCGAACATCTGGAATGGTCCGCCGCCCA
ATCTCTGGTCCAAATGAACTCCTCTAAGCAGGAAAAGCAACGGCGAGCAG
GAACTACAGGATCTCCTGCAACTGTGGCAGCGCCAGTCTCCGCCTCAGTG
TCGCTGCGCCGTCCAGTGGGCAGAGCTCCGGCGGAGGATGGCAAGGTGAT
TTTCTATGCCCCGCCCGCCAGCGCCAGTGGATCTCCGCGTCAGCCGGAGC
CGGTGGCCTTGAAGAGGGAGCGCGAGCGGGACAAGGAGCGCGAGAGGGAA
AAAGAACGCGAGCGGGACCGCATGCGGGAACAACAATTGGTCGCGGCGAC
GGCAGCGGCATCGATTTACCGGGGTCGCAGCGTGGAGGAAACGGAAGCGG
CCCACGATCTGCTCTCCCTGTCACAGAGTCTGCCGCCCCTGATCCCGCCA
TGCGTGGTCACCATCATGAAGCAGGAGCAGGAGCAACTGCGCTCCCCGGA
AATCCAGGAGATATCGAACAGCGCTTCCAGCCGATCGCCCCAGTCGACCA
TCCGGGTTCATTGGCAGCAGCTCATACGACCTGATGGGTGGCTCCTCGGA
GGGGCCAACAATTGCTCGCCTCTGACGCGCCGACTCCGGACCACAGCTCC
GACGTGAATATCGACATGTCTTCCTCCTCCGAATCAGTCTGGCAGCAAGG
GGGCAGCCCAATTCGACAGCAAAACAGCAGCGTGCTCGGCCCTCAGAGTG
TGCCCTCAAA
UFO08221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12605-RE | 2770 | CG12605-RE | 775..1864 | 9..1095 | 5120 | 98.5 | Plus |
| CG12605-RD | 7025 | CG12605-RD | 890..1979 | 9..1095 | 5120 | 98.5 | Plus |
| CG12605-RA | 4340 | CG12605-RA | 809..1898 | 9..1095 | 5120 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3959297..3959899 | 1095..496 | 2530 | 96.5 | Minus |
| 3L | 28110227 | 3L | 3961572..3962061 | 498..9 | 2435 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:14:34 has no hits.
UFO08221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:14 Download gff for
UFO08221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 801..1864 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:23 Download gff for
UFO08221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 801..1864 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:39 Download gff for
UFO08221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 801..1864 | 1..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:39 Download gff for
UFO08221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3959331..3959896 | 499..1062 | 98 | <- | Minus |
| 3L | 3961572..3962069 | 1..498 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:23 Download gff for
UFO08221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3959331..3959896 | 499..1062 | 98 | <- | Minus |
| arm_3L | 3961572..3962069 | 1..498 | 99 | | Minus |
