UFO08223.5prime Sequence
1128 bp (1015 high quality bases) assembled on 2011-07-23
> UFO08223.5prime
CAGTCGACATGAGCGATGCGACCTATCCGGGATATTACGGCGGCAACCAG
CTGCTCCCGTTGTCGCATCCGCATCCTACACATCCGCACCAAGACCTGTC
GCTTTCCACGCCGGTTCACTCCTTGGAGCAGGACTCCAACTTCGGGGGAT
TCTTTGACGAAGAGCTGGTCATCGGATCGGGATCCGGATCTGCCTCCGCG
TCTGCTGCAAACACCACCCCTTCTGGAACTACTTTGTGGCTGGCCGATGG
CGGGAATCGATCACCTACTGAGGTGGCGGTGGAGTCCCAGCCCAATCAGG
GCATTCCCTTTGTCCAGATCCACACCACCGACTTGCAGCAACCAGAGAAA
AGCTACCGCAATGCCTTCCGCAGGCGTACAGCGGAAATTAAGTCGGAGGA
ACTAATCAAGTCGGAACTTGCGGAAGCGGCAGCCAAGGATCGCCTGAATG
CCACGCCAACGCCACCAACTCGAAATTCCAGCTGCGCCAGCGTGGAGGGC
AAGGCAATCATTCAGGAGGGTCCGCCTCTTATCCTGCGCTGTCCTAATTG
TCCATTCTTAAGCCTCTGCCAGATGCGTCTTCAGCAACACCTTAGTCAGG
GCAACTGCTATATGGAGCAGCACAGGAAACAGTGTCCAGGCTGCTCAAAC
ATTTTCTACACCAGCGATGCGCTCAGCTTGCACCTCAGCTTGGACCATCA
AATGGAGGACAGTGAGACACTTGCGCTTATGGGCAGAAAAGTCACTGAAG
CACAAACTAAAAAGCAGACTCAGATGTCGCAGAGCCAAAATCGACCCAAG
AGCCGCATCTTTATAAAAAGCGTAGATTGCCTAAAGGAGCCACTCCCGGA
TTTCCCGCCCTTAATGCCGGATAGCGGGTCCGCCGCTAACATTCTTGATC
TGCTGGAAAGGGGTGGCTGTAGGTGCATCGCCGACCGAACAGACAATGCC
AACAGCACCTGCTGCGAATTTATCAGCCTCCGCCGCCAAAGCCCATCCAG
GAAGGATCTCCTTCAAGAGCGTGGAACGTGCTTCAGGAGAACCGCTTTGC
TGCCGTTCGAACTTCCAGCTGCAGAACCGTCGGTCAATAACGGAACAATA
GTCTCCTTGAAGTCCTGAAGTTTGTCCG
UFO08223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1233-RB | 4011 | CG1233-RB | 187..1293 | 9..1122 | 5155 | 98.2 | Plus |
| CG1233-RA | 4064 | CG1233-RA | 278..1346 | 47..1122 | 4965 | 98.1 | Plus |
| CG1233-RA | 4064 | CG1233-RA | 187..228 | 9..50 | 210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 361749..362342 | 47..640 | 2970 | 100 | Plus |
| 3L | 28110227 | 3L | 362424..362892 | 637..1113 | 1780 | 95.4 | Plus |
| 3L | 28110227 | 3L | 361658..361699 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:14:10 has no hits.
UFO08223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:11 Download gff for
UFO08223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-RB | 173..1291 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:13 Download gff for
UFO08223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-RB | 179..1297 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:30 Download gff for
UFO08223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1233-RB | 179..1297 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:30 Download gff for
UFO08223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 361650..361699 | 1..50 | 92 | -> | Plus |
| 3L | 361753..362341 | 51..639 | 100 | -> | Plus |
| 3L | 362427..362906 | 640..1128 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:13 Download gff for
UFO08223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 361650..361699 | 1..50 | 92 | -> | Plus |
| arm_3L | 361753..362341 | 51..639 | 100 | -> | Plus |
| arm_3L | 362427..362906 | 640..1128 | 95 | | Plus |
