UFO08224.5prime Sequence
1116 bp (1014 high quality bases) assembled on 2011-07-23
> UFO08224.5prime
CAGTCGACATGCCGCTGCTGAGCAAATGCTTCCCCTGCTTCAAATTCAAG
CGCGAGGAGGTGATCGACAAGCTGGACTACAGTAATACCCCGCTAACGGA
TTTCCCAGAAGTTTGGCAGCACGAGCGAACCCTGGAGGAGCTTTACCTGA
GCACCACAAGATTGCAAGCTCTGCCACCGCAATTGTTTTATTGCCAAGGA
TTAAGGGTGCTTCACGTAAACAGCAACAATTTGGAGAGCATTCCACAGGC
CATTGGCAGTCTGCGACAGCTGCAGCATCTGGATCTCAACCGGAATCTTA
TTGTCAATGTGCCCGAGGAAATCAAGTCCTGTAAGCACTTAACCCACTTG
GACCTGAGCTGCAACAGTTTGCAACGTCTTCCCGATGCCATTACCTCGCT
AATTTCGCTGCAGGAGCTGCTGCTAAACGAGACCTATCTAGAATTCCTAC
CAGCCAACTTTGGCCGATTGGTAAATCTGAGAATTCTGGAGCTGCGACTC
AACAATCTCATGACACTTCCCAAATCCATGGTGAGACTAATCAACCTACA
GAGGCTGGACATTGGCGGTAATGAATTTACCGAGTTGCCCGAAGTTGTCG
GCGAGTTGAAGTCCCTTCGCGAACTATGGATCGACTTCAATCAAATACGT
CGTGTTTCGGCCAACATTGGAAAGCTACGCGATCTGCAGCACTTCGAGGC
CAATGGCAACTTGCTGGACACTCTTCCCAGCGAGCTGAGCAACTGGCGCA
ATGTGGAGGTACTATCTATATGCTCCAACAGCCTGAGGCCTTTCCCTTCA
GCGTGGGCATGCTGAAGTCCCTGGTGACATTCAAGTGCGAGTCAAACGGT
TTGACAGAGTTACCCGACAGCATAAGCTACTTGGAACAGCTCGAGGAACT
AGTATTAAGCCACAACAAGCTTATACGCCTACCTAGCACAATTGGGATGT
TGCGTAGCCTTCGCCTTTCTGTTCGCCGATGATATCACTACGACTACTAC
CAGATGAGCTGGGGCAGCTGCAGCAGTGAGGGGTGCTAGGGGGGGCGGAA
CATCAGCTGTTCCGCTCTACCCACGAAACCATGGGAAACCTGAACAACGA
TGAAGGACTCAAGTGT
UFO08224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lap1-RB | 3841 | CG10255-RB | 414..1516 | 9..1112 | 5015 | 97.7 | Plus |
| Lap1-RA | 4587 | CG10255-RA | 397..1499 | 9..1112 | 5015 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14937049..14937475 | 587..1011 | 1930 | 98.4 | Plus |
| 2R | 25286936 | 2R | 14936547..14936836 | 298..587 | 1450 | 100 | Plus |
| 2R | 25286936 | 2R | 14936146..14936298 | 9..161 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 14936355..14936490 | 162..297 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:14:14 has no hits.
UFO08224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:11 Download gff for
UFO08224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RB | 397..1421 | 9..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:15 Download gff for
UFO08224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RA | 397..1421 | 9..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:32 Download gff for
UFO08224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RA | 397..1421 | 9..1030 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:32 Download gff for
UFO08224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14936146..14936298 | 9..161 | 100 | -> | Plus |
| 2R | 14936355..14936490 | 162..297 | 100 | -> | Plus |
| 2R | 14936547..14936836 | 298..587 | 100 | -> | Plus |
| 2R | 14937050..14937495 | 588..1030 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:15 Download gff for
UFO08224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10824555..10825000 | 588..1030 | 97 | | Plus |
| arm_2R | 10823651..10823803 | 9..161 | 100 | -> | Plus |
| arm_2R | 10823860..10823995 | 162..297 | 100 | -> | Plus |
| arm_2R | 10824052..10824341 | 298..587 | 100 | -> | Plus |
