UFO08228.5prime Sequence
1137 bp (1042 high quality bases) assembled on 2011-07-23
> UFO08228.5prime
CAGTCGACATGTGCGGTCCTTATCCGCGGAGGCGTCGCTACTACCAGATT
CGCGAATTCCAGATGGCCTCCTCGGCGGACGAGCTGGAAAGCGAGGATCC
GGACGATGAGCTGGAACTGGACGATTCCGAACCTCCAACCCGCGCTGAAG
ACTTGCCCAAGCGACTGTACGACATTAACGAGGCGGATGCGGACAGCAAG
GCCGTAAATCTAGAGCAGCTAACGATTAAAGAGGAGGATGCCTGGTGGAA
CCAAGTGCCATTGAACAACCTGGACCTGAGCTCAAACACCTTAACGCACA
TATCGCCAAAGATCGAGAATCTGCAATCACTTACCGTGCTTACGCTGCAC
GATAATGCTTTGGTGGAGTTACCACCGGAGATCGGCAAGCTGGAAAAGCT
AGTGCGCCTTAATGTGAGCCACAACAAACTCAGCCAGCTGCCGCGTGCGA
TGTACAGTCTACCGGAGCTGCGGCACCTCAACATCTCGTACAACGAGTTC
GTCGAACTTAATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTTGGA
CGGTGGGCATAACAATATTCAATCCCTGCCCGGTGGCATTGGGTTCCTGG
TGCGTCTAACTGCGCTCTTGTTGCCCTATAATCACATCAAGGAACTGCCG
CCCGATCTTGTTAACATGCGCTCTTTGCAAAAGATTGATCTGATGCATAA
TGATCTGACCAGCTTGCCGGAGGATATGGGCCTTTTGAGAAAGCTGGATT
GCCTTTATCTGCAGCATAACGACATACTGGAACTGCCCGAGTTCGAGGGA
AACGAGGCCTTGAACGAGCTACATGCCAGCAATAATTTCATCAAGATCAT
ACCAAAAGCTATGTGTAGTAACTTGCCACACCTGAAGATACTGGATTTGC
GGGACATAAGATCACGGAGCTGCCCGACGAGCTGTGCCTGCTGCGCAATC
TAAACCGTCTCGATGTGTCCAATAATACGATCAGCGTGCTGCCAGTCACA
TTGTCCTCCTTGGCTCATCTTGATTAGCCTGCAGGGGGGAAGGAAATTCC
CATTAAAAGACATCAGAACGCGAACATCCTACAGGGTGTGGAACACCGAA
GATCTTAAAGGACTCTGCACGAATAGAGCCCTGGGGG
UFO08228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| f-cup-RI | 3319 | CG9611-RI | 850..1962 | 8..1129 | 5255 | 98.5 | Plus |
| f-cup-RE | 2219 | CG9611-RE | 82..1194 | 8..1129 | 5255 | 98.5 | Plus |
| f-cup-RC | 3407 | CG9611-RC | 938..2050 | 8..1129 | 5255 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13697834..13698039 | 549..344 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 13698091..13698281 | 344..154 | 955 | 100 | Minus |
| 3R | 32079331 | 3R | 13697038..13697229 | 1035..844 | 865 | 99 | Minus |
| 3R | 32079331 | 3R | 13697292..13697464 | 845..673 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 13698343..13698488 | 153..8 | 730 | 100 | Minus |
| 3R | 32079331 | 3R | 13697523..13697647 | 672..548 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:14:48 has no hits.
UFO08228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:16 Download gff for
UFO08228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RE | 75..1199 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:29 Download gff for
UFO08228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RC | 931..2055 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:44 Download gff for
UFO08228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RC | 931..2055 | 1..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:44 Download gff for
UFO08228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13696945..13697227 | 846..1137 | 92 | <- | Minus |
| 3R | 13697292..13697464 | 673..845 | 100 | <- | Minus |
| 3R | 13697523..13697646 | 549..672 | 100 | <- | Minus |
| 3R | 13697835..13698038 | 345..548 | 100 | <- | Minus |
| 3R | 13698091..13698281 | 154..344 | 100 | <- | Minus |
| 3R | 13698343..13698491 | 1..153 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:29 Download gff for
UFO08228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9524065..9524213 | 1..153 | 97 | | Minus |
| arm_3R | 9522667..9522949 | 846..1137 | 92 | <- | Minus |
| arm_3R | 9523014..9523186 | 673..845 | 100 | <- | Minus |
| arm_3R | 9523245..9523368 | 549..672 | 100 | <- | Minus |
| arm_3R | 9523557..9523760 | 345..548 | 100 | <- | Minus |
| arm_3R | 9523813..9524003 | 154..344 | 100 | <- | Minus |
