UFO08231.5prime Sequence
1113 bp (1011 high quality bases) assembled on 2011-07-23
> UFO08231.5prime
CAGTCGACATGTATTCCGCGTTAGTTAGAGCTTGTGCTGTCATTGCTTTT
CTGATCTTGAGCCCGAATTGTGCCAGGGCTCTACAGGATCACGCCAAGGA
TAATGGTGATATTTTCATCATAAACTATGATAGTTTCGATGGCGATGTGG
ATGACATATCCACCACCACTTCAGCTCCTAGAGAGGCTGACTACGTAGAT
TTTGACGAGGTTAATCGTAACTGCAATGCTAGTTTCATAACGTCGATGAC
CAATGTCTTGCAGTTTAATAACACTGGGGATTTGCCAGATGACAAGGATA
AGGTAACCAGCATGTGCTATTTTCACTGCTTTTTCGAAAAGTCCGGTTTG
ATGACGGACTATAAGTTAAATACGGATCTGGTGCGCAAATATGTTTGGCC
AGCCACTGGCGATTCCGTTGAGGCCTGCGAAGCTGAAGGCAAGGACGAGA
CGAATGCTTGCATGCGGGGCTATGCCATCGTCAAGTGCGTGTTTACTAGA
GCCCTCACGGATGCTAGAAACAAACCCACTGTAGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGTGAAAACGGGGGCGAGAGTTGTCCATATTGGCCACGTT
TAAATCAAACTGTGAACTCCACCCAGGATTGCTGAAACGAAAACATATCT
CATAAACCCTTTAGAATAGCAGTTTTCACCGTACACGCCAATCTGCAATA
TGTGTAGAACTGCGAATCGTCTGGAATTCATCAGCGATGAACGGTCAGTT
GCCTATGCACGGT
UFO08231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp84a-RA | 663 | CG1176-RA | 20..544 | 9..533 | 2625 | 100 | Plus |
| Obp84a-RC | 782 | CG1176-RC | 154..663 | 24..533 | 2550 | 100 | Plus |
| CG10050-RA | 1894 | CG10050-RA | 1440..1680 | 249..9 | 1205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7251296..7251536 | 249..9 | 1205 | 100 | Minus |
| 3R | 32079331 | 3R | 7250996..7251123 | 441..314 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 7250844..7250935 | 533..442 | 460 | 100 | Minus |
| 3R | 32079331 | 3R | 7251176..7251240 | 314..250 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:14:56 has no hits.
UFO08231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:17 Download gff for
UFO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbprp4-RA | 15..548 | 4..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:34 Download gff for
UFO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp84a-RA | 15..548 | 4..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:49 Download gff for
UFO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp84a-RA | 15..548 | 4..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:49 Download gff for
UFO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7250844..7250935 | 442..533 | 100 | <- | Minus |
| 3R | 7250996..7251122 | 315..441 | 100 | <- | Minus |
| 3R | 7251176..7251240 | 250..314 | 100 | <- | Minus |
| 3R | 7251296..7251541 | 4..249 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:34 Download gff for
UFO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3076566..3076657 | 442..533 | 100 | <- | Minus |
| arm_3R | 3076718..3076844 | 315..441 | 100 | <- | Minus |
| arm_3R | 3076898..3076962 | 250..314 | 100 | <- | Minus |
| arm_3R | 3077018..3077263 | 4..249 | 99 | | Minus |
