UFO08232.5prime Sequence
1124 bp (998 high quality bases) assembled on 2011-07-23
> UFO08232.5prime
CAGTCGACATGTCGCCTAACCGTGTTTGCTTGCCACTTGGCCTGCCGCTG
TTGCTTTTCCTGCTCGGTTGCCTTGTGTCCTCGACTCATGGCACCTGCAA
CGTCTGCAACACCGTCAACAATCTGACCTGCTACTCCTCGACCCAGATGC
AGTCCTGCCAGGTGGACGTCCTGTCCACGGCCACGCCCACCGATTGCCCC
AGCGGCTATGTCTGCGTCAGCGGCTCCAGCGGTGTGCTCTGCCAGCCGGA
GGACTCGGCATCTGACAGTCAGGCGGACTGCCAGGAGTGCAACAAGTGCG
ATGAGACCCAGACGTTCGCCTGCACCGGAACCCAGAGCTTCGCCCTCTGC
CTGGGCACAGATACCGTCCAGGATTCGGTGGGCACCTGTGCCTCCGGTTA
TGTGTGCAACATCAACGACACCCAGATATGCGGTCTGCCAGCGGATGGGG
TGATGCCGACCTGTTCGTATAGCGATGACTCAACCACAACCACGGTGAGC
AGCACCACCAGCTCCACCACAGCGGCACCACCTTCCACCAGCTCGGCATC
CACTTACTGTGCGGCGGTTCAGTCGCAGGGAAAATACGCGGTCGGATATA
ACGCGTATACGACCTGTCGCCAGTATATCTACTGCACTTTGGTTGACGGA
AGTTGGATTGGCCAGACCTACACTTGTCCGGGATCCATGTACTTCGATAG
TGCCTCCGAGATGTGTGTGTCCACCATGCCATCCACCTGTTCCACAACTG
CAACAACGAGTTCCACGACGACTGCGGCACCCACGACCAGTAATCCGGAG
GCATATTGCCAGGCGATGCAGTCGGCGGGCTACTACCCGGGTGGGTACGG
ATGCCAGCACCACGTGTCATCAGTACATCGACTGTTTTCTGAACGGAAGC
ACTTGGGGTGGCAATATGTACACATGTCCCGGTAGCCTCTACTACAACAG
TGCCAGCAGAACATGTGTCTCCACCTTACCATCACATGCTCCACTCAGTG
CCAGTTTAACCCCTCCATGAAGTGATTTAGAATGCAGCTTTCTAGAACCA
TCCGATTAGCGCCGCGCGCCCAGTAAGTGGCTATAACTCTAATCGTAATC
ATATCAATATCCACACTTAGCCTA
UFO08232.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13312-RA | 1061 | CG13312-RA | 12..1036 | 5..1028 | 4920 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8805871..8806416 | 994..449 | 2620 | 99.5 | Minus |
| 3L | 28110227 | 3L | 8806756..8807202 | 451..5 | 2220 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:15:01 has no hits.
UFO08232.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:18 Download gff for
UFO08232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13312-RA | 7..1040 | 1..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:36 Download gff for
UFO08232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13312-RA | 7..1040 | 1..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:51 Download gff for
UFO08232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13312-RA | 7..1040 | 1..1031 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:51 Download gff for
UFO08232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8805832..8806415 | 450..1031 | 98 | <- | Minus |
| 3L | 8806758..8807203 | 1..449 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:36 Download gff for
UFO08232.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8798932..8799515 | 450..1031 | 98 | <- | Minus |
| arm_3L | 8799858..8800303 | 1..449 | 99 | | Minus |
