UFO08235.5prime Sequence
1133 bp (1026 high quality bases) assembled on 2011-07-23
> UFO08235.5prime
CAGTCGACATGGGTCTGATGCGGACAGTTGGCGGCGCCAGCGATGCACAG
CTGCCGGAGGAGGCGGTGTCTACGCTCAATCATTGCCCGACCTACCGACA
GATTCCAGGTGCCGGAACGGGCGCAGGATCAGCGCCAGCCAAGCGAGTAC
CCGTCCTGTTTTCCACCAACCGTGGACTCTATCTGCGCCTGGCCCAACCA
CTGGCAGATCAGATGGAGGTGATGACACTGCAGCCAAGCGGACAGAACTA
CAACATCAGCTTCTGCGATCTGGAGCGCTGGAGCACCAATCGGGCGAATG
TGGTCAGCCTGGAGGACACCTTTAGCATCATGCAGCAGCGCAATATGTCG
CCGGAGTCTATGAACTACCAGCCACGCCTGTGGAAGAACAACGTCAGCTA
CAGCCTGATGCACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCT
TTAGGGAAATAGGCCAGGTTTTCACCGTACACGCCACATCTTGCGAATAT
ATGTGTAGAACTGCCGGAATCGTCGTGTATTCACTCCAGAGCGATGAAAC
GTTCAGTTGCTCATGGAAAACGGTGTAACAGGGTGAACACTATCCATATC
ACAGCTCACGTCTTTCATACCAACGAATCGATTGACATTCATCAGGCCGG
CAAATGAATAGCCGATAACGTGGCCTATTTTCT
UFO08235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14313-RA | 652 | CG14313-RA | 164..569 | 8..413 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18191531..18191804 | 281..8 | 1370 | 100 | Minus |
| 3R | 32079331 | 3R | 18191327..18191459 | 413..281 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:14:39 has no hits.
UFO08235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:15 Download gff for
UFO08235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14313-RA | 158..575 | 1..420 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:24 Download gff for
UFO08235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14313-RA | 158..575 | 1..420 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:40 Download gff for
UFO08235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14313-RA | 158..575 | 1..420 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:40 Download gff for
UFO08235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18191327..18191458 | 282..413 | 100 | <- | Minus |
| 3R | 18191531..18191810 | 1..281 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:24 Download gff for
UFO08235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14017049..14017180 | 282..413 | 100 | <- | Minus |
| arm_3R | 14017253..14017532 | 1..281 | 98 | | Minus |
