UFO08302.5prime Sequence
1126 bp (1024 high quality bases) assembled on 2011-07-23
> UFO08302.5prime
CAGTCGACATGGTGCTACCATTATTGCAACGCTCCACGCTTCGCGGCGTT
CAACAAATGACGAAACCCTGGGCCGCCATTGGAAGTTTGCGTCTGGCCTC
CCAGGAGTTTCGCGTGGAGAGCGACACCTTTGGCGAACTGAAGGTGCCCG
CGGATAAGTACTATGGCGCCCAAACGATGCGATCCCAGATCAATTTCCCC
ATCGGCGGAGCCACCGAACGGATGCCCAAACCCGTGGTCCAGGCCATGGG
CATCCTGAAGAAGGCCGCCGCCGAGGTGAACAAGGAGTTCGGACTGGACA
GCAAGGTTAGCGAGGCGATCTCGAAGGCGGCCGACGATGTGATCTCTGGC
AAGCTATACGACGACCACTTCCCGCTGGTCATCTGGCAGACGGGCTCGGG
CACGCAGAGCAACATGAATGTGAATGAGGTGATCAGCAATCGTGCCATTG
AGCTGCTGGGCGGCAAACTGGGCTCCAAGACGCCCGTGCATCCCAACGAT
CATGTGAACAAATCGCAGAGCTCCAACGATACCTTCCCCACCGCCATTCA
CATCTCGGTGGCGCTGGAGCTGAACAACAACCTTAAGCCGGCGATTAAGA
CGCTGCACGATGCGCTGCGTGCCAAGTCGGAGGAGTTCAAGGACATTATC
AAGATCGGACGCACGCATACGATGGATGCGGTGCCATTGACGCTGGGCCA
AGAGTTCAGCGGCTATGCCCAGCAATTGGCCTACGCCCAGGAGCGCATCG
ATGCCTGTCTGCCGCGCGTCTATGAGCTGGCTCTGGGCGGCACTGCTGTG
GGTACGGGTCTGAACACACGCAAGGGATTCGCCGAGAAGTGCGCTGCAAA
GATCGCCGAGCTGACCAGCCTGCCCTTCGTTACCGCGCCCAACAAGTTCG
AGGCACTGGCTGCCCGCGATGCCATGGTGGAGGTGCATGGTGTGCTCACA
CGATCGCCGTTAGCCTGATGAGATTGCCAACGATATTCGTTTCTGGCTCG
ACGCGTTGCGGTTTGGGGTGGAGCTTCTCGCTACCGGAGAACGAGCCAGT
AGCTCATCATGCCCGCAGGTGATCCACGCATGCCAGTCCTGACATGCTCT
TCGCCAGGATGCATCAGTGGCGGTAC
UFO08302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0255-RA | 1740 | CG4094-RA | 107..1216 | 9..1105 | 5080 | 98.1 | Plus |
| l(1)G0255-RB | 1668 | CG4094-RB | 120..1144 | 94..1105 | 4655 | 98 | Plus |
| CG4095-RA | 1647 | CG4095-RA | 191..1159 | 106..1065 | 1765 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6680566..6681134 | 427..993 | 2745 | 99.6 | Plus |
| X | 23542271 | X | 6682504..6683065 | 427..986 | 1315 | 83.1 | Plus |
| X | 23542271 | X | 6680298..6680501 | 228..431 | 1020 | 100 | Plus |
| 3L | 28110227 | 3L | 11464368..11465081 | 948..238 | 970 | 76.1 | Minus |
| X | 23542271 | X | 6679825..6679957 | 95..227 | 665 | 100 | Plus |
| X | 23542271 | X | 6678530..6678617 | 9..96 | 440 | 100 | Plus |
| X | 23542271 | X | 6682225..6682412 | 234..418 | 230 | 76.1 | Plus |
| 2L | 23513712 | 2L | 10190847..10190998 | 562..411 | 190 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:15:23 has no hits.
UFO08302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:21 Download gff for
UFO08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RA | 58..1140 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:48 Download gff for
UFO08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RA | 100..1182 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:59 Download gff for
UFO08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RA | 100..1182 | 1..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:59 Download gff for
UFO08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6678523..6678616 | 1..95 | 96 | -> | Plus |
| X | 6679826..6679957 | 96..227 | 100 | -> | Plus |
| X | 6680298..6680498 | 228..428 | 100 | -> | Plus |
| X | 6680568..6681219 | 429..1073 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:48 Download gff for
UFO08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6572556..6572649 | 1..95 | 96 | -> | Plus |
| arm_X | 6573859..6573990 | 96..227 | 100 | -> | Plus |
| arm_X | 6574331..6574531 | 228..428 | 100 | -> | Plus |
| arm_X | 6574601..6575252 | 429..1073 | 97 | -> | Plus |
