UFO08303.5prime Sequence
1130 bp (1012 high quality bases) assembled on 2011-07-23
> UFO08303.5prime
CAGTCGACATGGCAAACGTGCGCTGTTTATACAAGCTTATTCGTCTGCAG
AAGCTCCTGCTGCCGCTCAATGCGACTAGCTCCCGTTTGGCTCCACTGCA
GCCGAGACCATTGACATTTTTAATAGCAAGGAGTTATGGAAAGGATGAGA
AGAAAGCCAATCTAGAAGACTTTAGAGCCCGCGAGGAGCAGCGCGAAAGG
GAGCGGGATGCGGCCGATCAAGCTGCCGAAAAGGCATCACAAAAAGAAGC
AGGCGGAGGTGGTGGACTGGGTGCAAAAGGATCAGAGTCTACAGGCCCAG
AAGATGACGCCAAGCAAGCCAAGGTGGATGCCATAAGGGCAAAGATCCTG
GACGCTGCATTGCAGCATGTGCCCCAGCAGGGCTGGACCCGCCAGGCCAT
CATTCTGGGTGCCGAGGAAAGTGGCTATCCTAGCGTGGTGCACGGCATGT
TTCCCGAGGGTGGCTTCGCGCTGGTCTCCCACTTCAACGGCAAGTGCAAC
GCCCAGCTGGTGGAAAGCCTGCAGCAAAAGACAGATGGTGGCAAGCAGGA
GGTGGAGGATCCTCTAGATTTTCTGGTACAAGCAGTGCGCCAGCGTCTGG
AGATGGTTACTCCCTACAAGACGCATTGGCCCCAGGCGATGGCCCTATTA
GCCCAGCCCCAGCATGCGCCCACAGCTCTGGCCCAGGTGCTCACCCTGGT
GGATGACATCTGCTACTACTCCGGAGATCGATCTGTGGATTTCGGTTGGT
ACACGAGACGTGTGGGTCTGGCGACCATCATGAAGATGACCGAGTTGTAC
TTCCTGCAGGACAAGTCCCCAGGACATGCGCAGACCTGGGAGTTCCTCAA
GAGCCGCATGGACGAGGCTGTGCAACTCCAAATGATGCTATCCCAAACAG
AGGGCATGACGCACACGTTCCAACGCTCCTTTAACTCGGCGTTCATCACG
GCGCGTAATATTCTCGGTCTGGGCTACATCGTAACGCAAGCTTTCTAGAA
CCATTCGGTTTGGCGCCGCGGCCAAGGTAAGTGGTCCTAATCAATAATCC
TAATCATAATCAATATCACCACCTAGCCTAGGAAGATCCTCGGTCATGAA
ACTGAGTGGCTTTGGAATCTCCACAAAAAA
UFO08303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30493-RB | 1577 | CG30493-RB | 75..1052 | 9..985 | 4865 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7701944..7702614 | 70..740 | 3355 | 100 | Plus |
| 2R | 25286936 | 2R | 7702674..7702884 | 741..951 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 7699327..7699387 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:15:27 has no hits.
UFO08303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:22 Download gff for
UFO08303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30493-RB | 47..1028 | 9..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:50 Download gff for
UFO08303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30493-RB | 75..1056 | 9..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:02 Download gff for
UFO08303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30493-RB | 75..1056 | 9..991 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:02 Download gff for
UFO08303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7699327..7699387 | 9..69 | 100 | -> | Plus |
| 2R | 7701944..7702614 | 70..740 | 100 | -> | Plus |
| 2R | 7702674..7702883 | 741..950 | 100 | -> | Plus |
| 2R | 7702941..7702968 | 951..978 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:50 Download gff for
UFO08303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3586832..3586892 | 9..69 | 100 | -> | Plus |
| arm_2R | 3589449..3590119 | 70..740 | 100 | -> | Plus |
| arm_2R | 3590179..3590388 | 741..950 | 100 | -> | Plus |
| arm_2R | 3590446..3590473 | 951..978 | 100 | == | Plus |
