UFO08304.5prime Sequence
1113 bp (1039 high quality bases) assembled on 2011-07-23
> UFO08304.5prime
CAGTCGACATGCTGTCCAGGGTCTTCTGTATGCGCCTGAACACCTATGGT
GTGGTCATTGGATGGCTGGGCGTGATTCTATCCTTCTTGGCCACGATCCT
CTTGTCCTTGGCCCTCGGATTCGTCGATGAAATTGCGCAGCAGATCGCCA
AGGGATCGGAAGATTCTAACAAGACGGCCACCGAGATTCGCAGTGTGCTA
ATCATCGTTTTCAGTGTTTACCTGGCGCTCAAGGTGATTAATCTTCTGGC
TTCGGCCATGTTGGTTGCAGGTACCGTTAAGGAACGCCATTTACTCCTGC
TGCCCTGGCTGATCAACAATGGAGTGCTGCTTGTCTTTGGAATTATCACC
AATATTGCAATGCTGGCCCAGATCATCGGAAATACATCTTTCCTGAGCGC
TCTTCCAATCATTTTCGTGGATGTTGGCCTGCTCTTGCTGACCTGGTATC
TCTACTACGGCATCTACTCGCTCTTCAAGCAGATCCAGGCATCCCGTGAG
ATCCAGCGCCCGCTGATCCCACAGCCGACCCAGCAGACCAACTCCTATCC
CAGCTACACCAAGATTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAAGCCATCACAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAA
CGGGGGCGAAGAGTGTCCATATTGGCCACGTTTAATCAACTGGTGAACTC
ACCAGGATGGCTGAACGAAAACATATCTCAATAAACCTTTAGAATAGCAG
TTCACCGTAACACGCCACATCTGCCAATAATGTGTAAGACTGGCGGAATC
GGTTTGGATTCAC
UFO08304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15098-RA | 953 | CG15098-RA | 114..671 | 9..566 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18834476..18834662 | 195..9 | 935 | 100 | Minus |
| 2R | 25286936 | 2R | 18833965..18834120 | 435..280 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 18833654..18833784 | 566..436 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 18834310..18834397 | 282..195 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:15:32 has no hits.
UFO08304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:23 Download gff for
UFO08304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15098-RA | 106..677 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:51 Download gff for
UFO08304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15098-RA | 110..681 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:04 Download gff for
UFO08304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15098-RA | 110..681 | 1..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:04 Download gff for
UFO08304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18833644..18833784 | 436..579 | 96 | <- | Minus |
| 2R | 18833965..18834118 | 282..435 | 100 | <- | Minus |
| 2R | 18834311..18834396 | 196..281 | 100 | <- | Minus |
| 2R | 18834476..18834666 | 1..195 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:51 Download gff for
UFO08304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14721149..14721289 | 436..579 | 96 | <- | Minus |
| arm_2R | 14721470..14721623 | 282..435 | 100 | <- | Minus |
| arm_2R | 14721816..14721901 | 196..281 | 100 | <- | Minus |
| arm_2R | 14721981..14722171 | 1..195 | 97 | | Minus |
