UFO08309.5prime Sequence
1183 bp (1020 high quality bases) assembled on 2011-07-23
> UFO08309.5prime
CAGTCGACATGGCCGAAATCTTGGCACGCTTGACGCGTGTTTCGGAAAAC
TACCTCCAAGAACTGGAGGAGGAGCCGGAGCCACAAGGACCGCCCAAACT
AACCAAGGCTCAGAAGAAGGCCGCCAAGAAAGAGGCCAAGCGACTGGCTA
TGATCGAGGAGAAGCGGCTCATCATGCGGGATGCCCTGATGCGCGAGCTG
GAGATGGGCAAGCATATGGAGGAGAAAGGCAACGAGGAGTGGCACGAGAT
GTGCCGCGAAATCAAGATCAAGGAGCTAAACGAGGAGATGAGGGCTTGGG
GCGAGCGCTCGGAACGTAACATTCAGGCCAAGAACGACCACATCAAGATG
CTTCTGGACGACATGGCGCAGACGCAGGATCAGCACGTGCGTTGCTACAG
CAAAACGGTGGAGCTGATTGATCACATTCGCGACTGCTTCCACGTGATGT
TGGGCGGGGTGAAGAGCATGTATGACCAGCAGGCTGACGAGATGCTGAGG
GATTACTATGAAGAGGTGCGCCGGCGCACCGAAGAGGTGGAAGCCATGAA
AACGAACTCCGAGAACATAATCCATGCCACCAACATCACCACCCGGGATC
AGCTGAAGGAGGATTACACTATCTACCTGGAGCAGCGCGACGATCGCGTG
AATACGGAGATTGAGAACAGATTTAAGATTCGAGATCAGATTGTCCGCCG
GATGACGCACATGCAGCAGCAACTGAACGACTTCGTGGAGTCGCTGAGGA
GCACCGAACTGGATGCCCACAAGTACGAGAAGATCCACTGGCTGACGGAG
CGGCAGGCGGCTTTCATGGAGGAGTCACGCAAGCTAAACGCCGAGGAGTC
CAAGTACATCAACATGCAGGCGGAACTGCAGCGCGAAATGGTTCGCATGG
ATGCGGAGAACAACTCCACGCTCAACGATCTTCGCCTGGAGTTCCAAGTA
CTTCACCAACGTGCGCAAGAAGATTGAGCTCAACCAGGAGATGGATCGCG
AGATCACGCCACGAGAAGTTGCGCCATCCTGACCGGCGGAGTGGCCTACG
AGTTGACCAAGCAAATGGAGAAGCCACGGTGAAAGTGGGAAATACCTCTT
GGCCTGTCGATCCACTTGGCAGGAAAACTTGCAACCGGATCGGAAAAGTA
TCCCTCGGCCGGCGGAGGATTTCGTACCACGAA
UFO08309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10510-RA | 1732 | CG10510-RA | 91..1233 | 9..1159 | 5295 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21208818..21209674 | 1038..179 | 4150 | 99.7 | Minus |
| 3L | 28110227 | 3L | 21209823..21209994 | 180..9 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:15:50 has no hits.
UFO08309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:25 Download gff for
UFO08309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10510-RA | 84..1168 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:00 Download gff for
UFO08309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10510-RA | 84..1168 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:08 Download gff for
UFO08309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10510-RA | 84..1168 | 1..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:08 Download gff for
UFO08309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21208798..21209673 | 180..1061 | 99 | <- | Minus |
| 3L | 21209824..21210001 | 1..179 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:00 Download gff for
UFO08309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21201898..21202773 | 180..1061 | 99 | <- | Minus |
| arm_3L | 21202924..21203101 | 1..179 | 97 | | Minus |
