UFO08312.5prime Sequence
1125 bp (1019 high quality bases) assembled on 2011-07-23
> UFO08312.5prime
CAGTCGACATGTCGTCTACGTTTAGATATAATCTATTAAGGAGTGTAAAG
CCATACACTTCATTCACTCCGCAATTGACTAAGTCTATGTTGCGTGTCCT
TATTCAAGTGTCTGTGCACTACATTGAATCAAAGAAGTCTTCGTCGGAAG
TGCTTTCCCTGGCACTAAATAAACTAACAAATGGAGGTCACGAAATCCCT
CCGAACTTTTGTGAACTTTTTACAATGGTTTTCTTGACAATGCAAATCTT
TTTAAGATATCCCAAGGGCGTGGTGAAGCATCATGAGCTGCGAAAATGTT
TAATGGACGATTTAAATTTAACAGAAGAATATGTTGAAGATATCTGCAAA
GTTTTGCTTAACCATCGAGACGTACTGAGCAAGAACTTTTCAGATACTAA
AATGGACCGTGTCAAAATGTCAAAGTTGCAATGGAGAATCAACATTTCCT
TATCATTAAATACCGTGCAAATTGATAAACCTACAATAGTCCTCCACTTT
AAGCTCCAAAATAAGGAATATCGAACTTTAGAATTGCCACTGTCCATGTT
TCAACAAGTGCGCTATAATATTGCTCTTTTACTAAATGAATTGCAGTCAT
TGCAAAGCCGATTGGCTTTAAAAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGACCTGA
TCGCAGCGGCATCAGCACCTTGTCGCTTGCGTATATATTTGCCCATGGTG
AAACGGGGGCGAGAGTGTCATATGCCACGTTAATCAACTGTTGAACTCAC
CCAAGGATGCTGAACGAAACCTATCTCATACTTTGAGCAATGCAGTCCCG
TACGCACTTGCAAATATTGTGTAAA
UFO08312.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LSm-4-RC | 931 | CG33677-RC | 68..682 | 9..623 | 3030 | 99.5 | Plus |
| LSm-4-RB | 1578 | CG33677-RB | 68..682 | 9..623 | 3030 | 99.5 | Plus |
| CG17768-RA | 1578 | CG17768-RA | 68..682 | 9..623 | 3030 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10404829..10405136 | 316..9 | 1540 | 100 | Minus |
| 2L | 23513712 | 2L | 10404388..10404550 | 623..461 | 770 | 98.2 | Minus |
| 2L | 23513712 | 2L | 10404611..10404754 | 460..317 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:15:18 has no hits.
UFO08312.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:21 Download gff for
UFO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17768-RA | 40..660 | 9..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:46 Download gff for
UFO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17768-RA | 68..688 | 9..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:59 Download gff for
UFO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17768-RA | 68..688 | 9..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:59 Download gff for
UFO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10404829..10405136 | 9..316 | 100 | | Minus |
| 2L | 10404382..10404550 | 461..631 | 96 | <- | Minus |
| 2L | 10404611..10404754 | 317..460 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:46 Download gff for
UFO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10404382..10404550 | 461..631 | 96 | <- | Minus |
| arm_2L | 10404611..10404754 | 317..460 | 100 | <- | Minus |
| arm_2L | 10404829..10405136 | 9..316 | 100 | | Minus |
