UFO08316.5prime Sequence
1129 bp (1034 high quality bases) assembled on 2011-07-23
> UFO08316.5prime
CAGTCGACATGTGTTCCCGCAACATAAAGATCTCGGTGGTGCTGTTTCTC
GTCCTGATACCAATCTTCGCCGCCTTGCCACACAACCACAATCTGTCGAA
GCGCAGCAACTTCTTCGACCTGGAGTGCAAGGGCATCTTCAACAAGACCA
TGTTCTTCCGACTGGACCGCATCTGCGAGGACTGCTACCAGTTGTTCCGC
GAGACGAGTATACACCGATTATGCAAGAAAGACTGCTTTGATTCAAAATG
GTTTGGCGAATGCCTGAAAGTGCTGTTAATACCCGAAGAGGAAATATCCA
ACCTACAGCACTTTCTGAGAGTAGTGAACGGCTCGCCCATATCCTTCAAC
ATGGGGCCGCAAACAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCAT
TCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCA
GCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAA
ACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGT
GAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAACCC
TTTAGGAAATAGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATAT
ATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACCCCAGAGCGATGAA
ACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGTGACACTATCCCA
TATCACAGCCTCCACCGTCTTTCATGCATACGAAATTCCGATGAGCATTC
ATCAGGCGGCAGATGTGGGATAGCCGATAAACTTGTGCCTATTTCTTACG
CTTTAAAGGGCGTAATCAGCTTAACGCCT
UFO08316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ITP-RG | 974 | CG13586-RG | 103..459 | 9..365 | 1770 | 99.7 | Plus |
| ITP-RD | 3646 | CG13586-RD | 1081..1437 | 9..365 | 1770 | 99.7 | Plus |
| ITP-RF | 1531 | CG13586-RF | 660..1016 | 9..365 | 1770 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24555354..24555576 | 9..231 | 1085 | 99.1 | Plus |
| 2R | 25286936 | 2R | 24556284..24556422 | 227..365 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:15:55 has no hits.
UFO08316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:26 Download gff for
UFO08316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| itp-RD | 1080..1444 | 9..377 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:02 Download gff for
UFO08316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| itp-RF | 652..1024 | 1..377 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:09 Download gff for
UFO08316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ITP-RF | 652..1024 | 1..377 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:09 Download gff for
UFO08316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24555354..24555571 | 9..226 | 99 | -> | Plus |
| 2R | 24556284..24556422 | 227..365 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:02 Download gff for
UFO08316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20442877..20443094 | 9..226 | 99 | -> | Plus |
| arm_2R | 20443807..20443945 | 227..365 | 100 | == | Plus |
