UFO08317.5prime Sequence
1147 bp (1049 high quality bases) assembled on 2011-07-23
> UFO08317.5prime
CAGTCGACATGCATTTAAATAAATATAGTGAAGTAGTGGAGCGGCTTGAG
AACGAGGAATTTGAGCAAGTCGAACTGGGAGCTGAAGTCTACCAGCAATT
ACTTGCTATTTACCTCTATCAAAACAAACTGGCTGATGCCAAGTTGTTGT
GGATGAGAGTTCCAGCTAACCTAAGGGATGACAAGGAACTGATCCAGCTG
AACCTGCTCAATATTGCCCTGCAGAACAATAACTATGCCGATTTCTTCAA
ACACATCAAGTATGAGTGGTCGGAAAGAGTAAAGTCACCTGTGGAGGATC
TTCTAAATAAGCAACGCGAAGAGCTGTTCAAACTAATGGGCAGCGCATAT
ATGTCCATTTACCAGCACAATCTACTGGAATTGTCACTAATGTCGGAGGA
CGAACTGAAACACGCCTGTGCGGCCTTAAATTGGACTGAGGAACTGGACG
GTGACCGGGTAATCCTGAAGCCCAAGGTTCAGGAAGCACCGCCAGCTCGT
GGAAACGATGACCAGTTGCTTAAGTTGACCGAGTTTGTAACCTTCCTAGA
GAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAGAG
TGTCCATATTGCCACGTTTAATCAAACTGTGAAACTCACCCAGGATGCTG
AGACGAAAAACATATTCTCAATAACCTTAGGAATAGCAGGTTTCACCGTA
CCCGCCACATCTGCGAATAATTGGTGAGAACCTGCGAAATCGTCTTGATT
CACTCGACGATGAAACCGTCCAGTTTGCCTATGGAACGGTTAACAAG
UFO08317.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN8-RB | 641 | CG13383-RB | 69..614 | 9..554 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8365389..8365636 | 307..554 | 1240 | 100 | Plus |
| 2L | 23513712 | 2L | 8365153..8365328 | 131..306 | 880 | 100 | Plus |
| 2L | 23513712 | 2L | 8365038..8365105 | 64..131 | 340 | 100 | Plus |
| 2L | 23513712 | 2L | 8364923..8364979 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:15:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| F-element | 4708 | F-element F 4708bp | 2581..2611 | 108..138 | 119 | 87.1 | Plus |
UFO08317.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:27 Download gff for
UFO08317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN8-RB | 85..642 | 1..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:04 Download gff for
UFO08317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN8-RB | 62..619 | 1..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:10 Download gff for
UFO08317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN8-RB | 62..619 | 1..560 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:10 Download gff for
UFO08317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8365389..8365636 | 307..554 | 100 | == | Plus |
| 2L | 8364916..8364979 | 1..65 | 93 | -> | Plus |
| 2L | 8365040..8365104 | 66..130 | 100 | -> | Plus |
| 2L | 8365153..8365328 | 131..306 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:04 Download gff for
UFO08317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8364916..8364979 | 1..65 | 93 | -> | Plus |
| arm_2L | 8365040..8365104 | 66..130 | 100 | -> | Plus |
| arm_2L | 8365153..8365328 | 131..306 | 100 | -> | Plus |
| arm_2L | 8365389..8365636 | 307..554 | 100 | == | Plus |
