UFO08318.5prime Sequence
1119 bp (1003 high quality bases) assembled on 2011-07-23
> UFO08318.5prime
CAGTCGACATGTTGAAGGCGATTATCGTTTTTGCCACTATCTTGGTGGCC
GTGGCCATGGCCATGCAGCCACTGGAGGACAATGAGCGAACCCATCATCT
GAACCACAAGCGCCAGTTGTCGCAACAGCACCACCACCACCACCAAAAGC
TCCAGGAGGTGAGGCATTCGGGCCATGATAGTCTGAAACATGGTGGTTCC
CACGTTAAGGAGCATCAAGCGCATCACTCTGAGCGAAAGGCCAGGCAGAG
CCACAAGGAGCCGGGCCACAAGAAGAGTCACCACCAGAAGGAGCACCGCC
AGCAGCAGGACAACCACACCCGCAAATCCCGATCGCATTCCAAGGGCAGC
AAGCAGCATCACAAGCGGCACACGGGATCGCGTCGCCACGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAACCCTTTAGGGAAATAGGCCAGGTTTTCAC
CGTAACACGCCACATCTTGCGATATATGTGTAGAAACTGCCGGAATCGTC
GTGTATTCACTCCAGAGCGATGAAAACGTTCAGTTTGCTCATCAAACGTG
TAACACGTTGACACTATCCATATCACCAGCTCCACCGTCTTCATGCATAC
GAATCCGGATGACATTCATCAGCGGCAGATGTGATAAGGCGATAACCTTG
GCTATTTCCTTACGCCTTA
UFO08318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34232-RC | 775 | CG34232-RC | 178..559 | 8..389 | 1910 | 100 | Plus |
| CG34232-RA | 702 | CG34232-RA | 105..486 | 8..389 | 1910 | 100 | Plus |
| CG34232-RB | 831 | CG34232-RB | 246..615 | 20..389 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12165125..12165494 | 389..20 | 1850 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 696..737 | 287..328 | 111 | 73.8 | Plus |
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 8578..8619 | 287..328 | 111 | 73.8 | Plus |
UFO08318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:27 Download gff for
UFO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34232-RA | 78..466 | 1..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:06 Download gff for
UFO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34232-RA | 78..466 | 1..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:12 Download gff for
UFO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34232-RA | 98..486 | 1..389 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:12 Download gff for
UFO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12165125..12165493 | 21..389 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:06 Download gff for
UFO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8052630..8052998 | 21..389 | 100 | <- | Minus |
