UFO08321.5prime Sequence
1170 bp (1050 high quality bases) assembled on 2011-07-23
> UFO08321.5prime
CAGTCGACATGTCATCGCACGGCCTTGCTTACACAACAAGAATTGAAAGA
AAGTCTTATAGAGAACTACAAATCAATAGAGATCAATACTTTGTAACTGC
GCCAAATGAAGAAGATTTGGTTATGAGTTTATCTCCAAAGGACACACTTA
TACATACTGCCATTTCCCAGCACCATCAAGTGGATACTTCTACTAAATTA
AATACAAACGAAACATCGACACAAAATACCGTATCTACAGCAGCCGCGGC
AGCGGTTGCACATCACCACCACAACCTTTCTAGTATTCACCACCTCCAAA
ACCTGCATAGTCAGCATCAAAGTACTTTATTTAATAGTAATCACTCAACA
CCCTTTAGCGTGACCGATATCTTAAGTCCAATTGAAGAATCGTATCGCAA
ACTGGAACTGAACGGAAATCCACCATCTCCGTTTCGATCAAACTCTAGTA
GCAGCAGTATTAATTCTCCTGGAACATTAACTACATCAACTATGGCGAAT
CCGTACGCTATGGGAACCTTATATCACAGCCCAGGTGTACAGACCTATTG
CGGACCTACCGATAACCTATCTCTGGCTGGTCACTACACTGACATGAGAA
ATTCTGCATCGTGGTACGGATCAACAGCTAACGACCCAAGATTTGCAATT
TCACGCCTAATGAGTTCATCAGCCAGTGGAACAATGAGTCATATGGGAAA
CATGAGTGGACTAGCAGCTTGCAGTGTAAGCGATTCAAAACCGCTACAGT
TTCCTTTAGCACAAAGAAGAAAGCGAAGAGTTTTGTTTACGCAAGCCCAG
GTTGGTACTTACATCCTTAGTTTGCTACTTAAAAAAAAAACACAAATATT
TACCGAATGGAAAGAAGTCAACTTGCTACAGGCAAAAGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGAATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCACCGAGCGTTCTGA
ACAATTCCAGAATGGGAGTCTGGAGGTCATTTACTGGAATCTATCCACCA
GGAATCAGGCGAGCCTCGGATATCCAAATTACGCCCGGGCCTGGCCACTC
ATCGCAATATCCTGTGTTGA
UFO08321.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scro-RB | 1246 | CG17594-RB | 310..1189 | 8..887 | 4400 | 100 | Plus |
| scro-RC | 1874 | CG17594-RC | 310..1104 | 8..802 | 3975 | 100 | Plus |
| scro-RA | 1961 | CG17594-RA | 310..1104 | 8..802 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24725864..24726292 | 8..436 | 2145 | 100 | Plus |
| 3L | 28110227 | 3L | 24734036..24734274 | 649..887 | 1195 | 100 | Plus |
| 3L | 28110227 | 3L | 24728296..24728508 | 436..648 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:16:13 has no hits.
UFO08321.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:29 Download gff for
UFO08321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 122..1010 | 1..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:09 Download gff for
UFO08321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 306..1194 | 1..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:16 Download gff for
UFO08321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 306..1194 | 1..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:16 Download gff for
UFO08321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24725860..24726292 | 1..436 | 99 | -> | Plus |
| 3L | 24728297..24728508 | 437..648 | 100 | -> | Plus |
| 3L | 24734036..24734279 | 649..892 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:09 Download gff for
UFO08321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 217368..217611 | 649..892 | 99 | == | Plus |
| 3LHet | 209192..209624 | 1..436 | 99 | -> | Plus |
| 3LHet | 211629..211840 | 437..648 | 100 | -> | Plus |
