UFO08322.5prime Sequence
1143 bp (1021 high quality bases) assembled on 2011-07-23
> UFO08322.5prime
CAGTCGACATGCGTTCATCTACCGTGCTACTTGCGGCAATCGCCGTTCTC
TTAGTTTCGGGCTACGAAGCTGCCGTTGTCCGAGGCGTCTTCGAGGATCC
AACCCATCCTGGAAAGTGTGTTCTCGAGGGTTTGGTTCTTGAAAAAGGTC
AAAGTGCACGCCACCCACAGAGGTGTGAGCGAATCATATGCGGAGAAAAT
AGTGCGGCAGAAATCCAATCATGTGGTGCCTATGGACTTCCCCCCGGCAA
AAAGTTTGGAAAGTACACAAACCCAAACGCAGATTACCCTGATTGCTGTA
ATCGTGAGATTATCAACCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAAT
AAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTT
GCGAATATATGTGTAGAAACTGCCGGGAAATCGTCGTGGTATCACTCCAG
AGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTAACAAGGTGAA
CACTATCCCAATATCACCAGCTCCACCGTCTTTCATTGCCATACGAAATC
CGGATGAGCATTCATCAGCGGGCAGATTGTGAATAAAGCCGATAACCTTG
GTGCTTATTTTTCTTTACGTCTTAAAAGCCCGTATATCCGCTTGAACCGC
TGTTTAAGGTACTGACACTTGACTGGAATGCCTCAATGTTCTT
UFO08322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34215-RA | 444 | CG34215-RA | 32..343 | 9..320 | 1560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6831551..6831762 | 220..9 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 6831397..6831496 | 320..221 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:15:05 has no hits.
UFO08322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:19 Download gff for
UFO08322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34215-RA | 30..346 | 9..328 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:11:38 Download gff for
UFO08322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34215-RA | 32..348 | 9..328 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:53 Download gff for
UFO08322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34215-RA | 32..348 | 9..328 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:53 Download gff for
UFO08322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6831397..6831496 | 221..320 | 100 | <- | Minus |
| 2R | 6831551..6831762 | 9..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:11:38 Download gff for
UFO08322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2718902..2719001 | 221..320 | 100 | <- | Minus |
| arm_2R | 2719056..2719267 | 9..220 | 100 | | Minus |
