UFO08327.5prime Sequence
1118 bp (993 high quality bases) assembled on 2011-07-23
> UFO08327.5prime
CAGTCGACATGGACTGCTGCCTATCGGACCAGGCTTGTGAGGAAAGGCGT
ATCAGCAGGGAAATTGATAAGTTCCTGAAAGCGGAAAAGAAGAAAGCTCG
ACGTGAACTTAAGCTATTGGTCCTGGGCACAGGTGAATCGGGCAAGACCA
CATTCATCAAACAAATGCGCATCATTCACGGCAAAGGATTTTTGGACAAG
GAGAGGAAGCAGTTCACCAAAAATGTTTTCCAAAACATATTCATGGCCAT
ACAGTCGATGATCAGTGCAATGGATACTCTGCGAATTCCCTACGGTCAGC
AGGAGCATAGTAAACTTGCCGATCTGGTGAAGAGCATCGATTACAAGACA
GTTACCAGACTGGAGGCGCCCTACTTGAATGCCATCAAAACTCTTTGGAA
AGATGCTGGCATCAAGGAGTGCTACAATCGTCGTAGGGAATATCAGCTGA
CTGATTCAACTGAATACTTTTTGAATGACATAGCGCGAATTGAACGGAGT
GATTACCAGGCCACTGATCAGGACATTCTTCATGTTCGAGCGCCAACAAC
CAATATTGTTGAGTATCCCTTCAATTTGGACGGTTTTCTGATAAGATTGG
TGGACGTCGCTGGTCAGCGAACGGAGAGAAGAAAGTGGATTCATTGTTTT
TCCAATGTGACATCAATTATGTTTTTGGTTGCCATGTCCGAGTTTGATCT
ATCCTTGGCTGAATCGGAGAATGATAATCGTATGAAGGAATCTAAAGCTT
TATTTCACAATATAATATCGTTTTCATGGTTTCAACACTCGTCCGTTATT
CTGTTTCTAAACAAGGAGGATTTATTTAAAAAGAAATATTGTCAACGCAT
TTGGCAGACTATTTTCCTGAATATAATGGTCCAAAGAAGGATGCTAACGC
AGCCCGAGAATTCATATTGTACATGTTTACTAGCGTGAATCTGATCCTAC
AAGTGCATCTATCCTCATTTCACCGTTGCTACAAATACTGAAAAAATAAG
TTCGTGTTCACTGCTGTCAAAGAAACAATTCTGGATTGCTTAAGTGAACT
AATTGCTGCCAGCCTTCCTAGAACATTCGTTGGCGCGCGATCCAGTAAGT
GGACCATAATCATATCAT
UFO08327.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17760-RB | 1535 | CG17760-RB | 375..1429 | 8..1054 | 5010 | 98.8 | Plus |
| Galphaq-RD | 1615 | CG17759-RD | 548..1318 | 123..892 | 1385 | 78.7 | Plus |
| CG30054-RE | 1062 | CG30054-RE | 93..878 | 101..885 | 1190 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12626983..12627168 | 126..311 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 12627237..12627391 | 312..466 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 12627971..12628126 | 726..880 | 730 | 99.4 | Plus |
| 2R | 25286936 | 2R | 12627785..12627916 | 594..725 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 12627598..12627726 | 467..595 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 12626798..12626917 | 8..127 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 12624150..12624303 | 313..466 | 500 | 88.3 | Plus |
| 2R | 25286936 | 2R | 12616788..12616933 | 313..458 | 460 | 87.7 | Plus |
| 2R | 25286936 | 2R | 12628193..12628301 | 878..984 | 415 | 96.3 | Plus |
| 2R | 25286936 | 2R | 12617793..12617923 | 594..724 | 295 | 81.7 | Plus |
| 2R | 25286936 | 2R | 12617987..12618142 | 726..880 | 250 | 78.8 | Plus |
| 2R | 25286936 | 2R | 12624565..12624645 | 598..678 | 225 | 85.2 | Plus |
| 2R | 25286936 | 2R | 12623919..12624086 | 144..311 | 210 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:16:32 has no hits.
UFO08327.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:31 Download gff for
UFO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17760-RB | 350..1409 | 8..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:15 Download gff for
UFO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17760-RB | 375..1434 | 8..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:24 Download gff for
UFO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17760-RB | 375..1434 | 8..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:24 Download gff for
UFO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12626798..12626916 | 8..126 | 100 | -> | Plus |
| 2R | 12626984..12627168 | 127..311 | 100 | -> | Plus |
| 2R | 12627237..12627391 | 312..466 | 100 | -> | Plus |
| 2R | 12627598..12627726 | 467..595 | 100 | -> | Plus |
| 2R | 12627787..12627916 | 596..725 | 100 | -> | Plus |
| 2R | 12627971..12628124 | 726..878 | 99 | -> | Plus |
| 2R | 12628194..12628301 | 879..984 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:15 Download gff for
UFO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8514303..8514421 | 8..126 | 100 | -> | Plus |
| arm_2R | 8514489..8514673 | 127..311 | 100 | -> | Plus |
| arm_2R | 8514742..8514896 | 312..466 | 100 | -> | Plus |
| arm_2R | 8515103..8515231 | 467..595 | 100 | -> | Plus |
| arm_2R | 8515292..8515421 | 596..725 | 100 | -> | Plus |
| arm_2R | 8515476..8515629 | 726..878 | 99 | -> | Plus |
| arm_2R | 8515699..8515806 | 879..984 | 96 | -> | Plus |
