UFO08329.5prime Sequence
1168 bp (1039 high quality bases) assembled on 2011-07-23
> UFO08329.5prime
CAGTCGACATGGCCTTTTCCCGCCACAACATCGAGAAGCGCCGACTCATC
GAGCTCGTGCGACTCAACCCAATCCTCTGGGACTGCCGCCTGCCACACTA
CAAGCGTTCGGACAAGCGAAAAGCCATCAAATGGAACGAGTTGGGGCGGC
TCTTCAACGTTAATGGCGAGCGGGTGCAGCGCACGTTTACTTCGCTCCGC
GAGATCTTCCGCCGCGAACTGAACCACGAAAAGATGCTGGGCACCACGCG
CTTCAAGTCCAAGTGGGAATACTACGATGCCATGGCCTTCCTCAAGGAGG
TCATTCGGGAACGCAAATCTCGCGAGCGCATCAAGCACGGCTCTTTGGAT
TCAGCACCAGTAGCCACAGGCAGCAGCAACAATAACAACAACTGCGTAAG
CCGCAATAGCAGCAACAACAACAGCAGCAGTGCGGCCCTAGACGAATATC
AGTACTTTGCTCCTAGCGACCCCAACAACCCGAACAATCAGCCCCAGCTG
CAGCCCGAACCAAAGAGTAGTCTGCCAGTGACTATTCCCAGTCTAAGTCT
CACCCTCAGCCAGTTGCCGGTGGCTCTGCAGCAGCAGGCCCAGCATCTCC
AAGCCTTACAGTTGCAACCGGACGTGACGCTGACTTCCCTGCAGAAACAA
TCTTTACCCACTTCCCTTACCAATGCCACACCCGCGCCCTTAGCACAAAC
CTCGCCCGCCCAGGTGCTGTCCAGCTCGCGCTCATGCAGCTCTTCGCCCT
CCATCTATATAAAGGACGAGCCGTGTTCTCCGGCAGGGGGTTGTCCGGAA
GAAGTGATGACCGGAAATGGACCAGAGGCGACAAGGAAGAAGCTGGCCAC
AATTCGTCCGCAGACCAAACAGCAACTTAAAGCGCGTCTGCAGCTGCCCA
CGCCCAAAAACTCATCATCGTACGCTACGTCGCCGCCCCATTTGATCATC
AATGCCAACAACGAGCTTATTGACACCGACGCCGGGACCTGAGAGATCTG
GACGACTTCGACGAGGACGACGACGTGACCGACGCTGCTCACCAATCGTC
GGCAGTCGGAAAACGATGGTGCCGACGGCAGAACTTCGTCGAGCATTATT
ATCGGTGAACGGTGGCCACTGCGGAGGGATGTTGCAAGGCCCCACCTCAG
GGCCGCGACACCGTGTCC
UFO08329.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12768-RD | 1855 | CG12768-RD | 340..1465 | 8..1125 | 5245 | 98.3 | Plus |
| CG12768-RC | 2214 | CG12768-RC | 411..1536 | 8..1125 | 5245 | 98.3 | Plus |
| CG12768-RB | 1960 | CG12768-RB | 157..1282 | 8..1125 | 5245 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22913264..22914035 | 317..1082 | 3500 | 97.8 | Plus |
| 3L | 28110227 | 3L | 22911925..22912233 | 8..316 | 1530 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:16:41 has no hits.
UFO08329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:33 Download gff for
UFO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12768-RA | 166..1272 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:19 Download gff for
UFO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12768-RB | 149..1255 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:25 Download gff for
UFO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12768-RB | 149..1255 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:25 Download gff for
UFO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22911917..22912233 | 1..316 | 98 | -> | Plus |
| 3L | 22913264..22914053 | 317..1097 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:19 Download gff for
UFO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22905017..22905333 | 1..316 | 98 | -> | Plus |
| arm_3L | 22906364..22907153 | 317..1097 | 98 | | Plus |
