UFO08330.5prime Sequence
1112 bp (1002 high quality bases) assembled on 2011-07-23
> UFO08330.5prime
CAGTCGACATGGCCAAGGATAATCTAACAGCAGTGCTGCACGGCATTGAG
GACATGCGATTGGAGCAACGTCCTATTCCAGAGATTGCTGATGATGAGGT
TCTCCTGGCCATGGATAGTGTTGGCATTTGCGGCTCTGATGTACACTACC
TTGCACACGGACGCATTGGCGACTTTGTGCTCACTAAGCCCATGATTATT
GGCCACGAGTCCGCCGGCGTGGTGGCTAAGCTGGGCAAGAAGGTGACCAC
ACTGAAGGTCGGCGACCGCGTGGCCATCGAACCGGGCGTACCCTGCCGTA
AGTGCGACCATTGCAAGCAGGGCAAATACAACCTGTGCCCCGGAATGGTC
TTCTGTGCCACGCCCCCCTACGACGGCAACCTCACCCGCTACTACAAGCA
TGCGGCGGACTTCTGCTTCAAGCTGCCCGACCACGTCACCATGGAGGAGG
GCGCCCTGCTCGAGCCTCTGTCTGTGGGCGTGCATGCCTGCAAGCGGGCG
GAGGTCACCCTGGGCTCAAAAGTTCTCATCCTGGGAGCAGGACCCATTGG
CCTGGTCACTTTAATGGCTGCTCAAGCCATGGGTGCGTCTGAGATCCTCA
TTACGGATCTTGTGCAGCAACGCCTCGATGTAGCTAAAGAGCTAGGTGCA
ACTCACACCCTCCTGCTGAAACGGGATCAGACCGCCGAGGAGACGGCGGT
GCTCGTCCAAAAAACGATGGGCGGTCAGCCGGACAAGTCCATCGACTGCT
GTGGAGCAGAGAGCAGTGCCCGACTGGCCATCTTCGCCACTCGTTCCGGT
GGCATTGTGGTGGTGGTGGGCATGGGAGCAGCTGAGATCAAGTTGCCCCT
AATTAATGCCCTGCCCGGGAAGTGGACATCCGCGGCGTCTTCCGCTACTG
CAATGACTATGCCGCTGCCCTGCCCTTGTCGCCTCCGGAAAGGTGATGTA
AGCGTCTGTGACCCACCATTTCGACATCAGAAACGCAAGGCGTTTGAAAC
GTCACGAAAGGACTGGTGGTGCCATCAAGTCATGATCCACGTTCCAGCCC
AAGACCCCAACAATCCCCCGCATTCGCAAGCCTTTCTAAACATCGGTGGC
GCGCGGGCCAGT
UFO08330.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sodh-1-RB | 1195 | CG1982-RB | 70..1139 | 9..1066 | 5000 | 98.6 | Plus |
| Sodh-1-RA | 1387 | CG1982-RA | 262..1331 | 9..1066 | 5000 | 98.6 | Plus |
| Sodh-2-RA | 1346 | CG4649-RA | 71..1123 | 8..1049 | 2015 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7053127..7053598 | 96..567 | 2360 | 100 | Plus |
| 3R | 32079331 | 3R | 7053862..7054082 | 566..786 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 10876899..10877362 | 96..559 | 1090 | 82.3 | Plus |
| 3R | 32079331 | 3R | 7054140..7054261 | 786..906 | 560 | 99.2 | Plus |
| 3R | 32079331 | 3R | 10877428..10877648 | 566..786 | 460 | 80.5 | Plus |
| 3R | 32079331 | 3R | 7052596..7052650 | 9..63 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:16:46 has no hits.
UFO08330.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:33 Download gff for
UFO08330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sodh-1-RA | 255..1336 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:22 Download gff for
UFO08330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sodh-1-RA | 255..1336 | 1..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:27 Download gff for
UFO08330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sodh-1-RA | 255..1336 | 1..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:27 Download gff for
UFO08330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7052589..7052649 | 1..62 | 95 | -> | Plus |
| 3R | 7052708..7052741 | 63..96 | 100 | -> | Plus |
| 3R | 7053128..7053597 | 97..566 | 100 | -> | Plus |
| 3R | 7053863..7054081 | 567..785 | 100 | -> | Plus |
| 3R | 7054140..7054261 | 786..906 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:22 Download gff for
UFO08330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2878311..2878371 | 1..62 | 95 | -> | Plus |
| arm_3R | 2878430..2878463 | 63..96 | 100 | -> | Plus |
| arm_3R | 2878850..2879319 | 97..566 | 100 | -> | Plus |
| arm_3R | 2879585..2879803 | 567..785 | 100 | -> | Plus |
| arm_3R | 2879862..2879983 | 786..906 | 99 | -> | Plus |
