UFO08332.5prime Sequence
1131 bp (1025 high quality bases) assembled on 2011-07-23
> UFO08332.5prime
CAGTCGACATGGAGATGAGTGCTGCCATGTTCGCACGCGTTTCCTTCTAC
CCCACCCTGCTGTACAATGTCCTGATGGAAAAGGCATCGGCCAGGAATTG
GTACGATCGCATCGATGAGCATGTGATACTGGGAGCACTGCCCTTTCGCA
GCCAGGCCAATGACCTCATTGAAAAGGAGAACATGAAGGCGGTGGTGTCG
ATGAACGAGGACTATGAGCTGACCGCCTTCTCCAACAACACGGAGAAGTG
GCGAAAGCTTGGCATTGAGTTCCTGCAGCTGGCCACCACCGACATCTTTG
AGTCGCCCAATCAAGAAAAGCTCTTCCGCGGCGTGGAATTCATAAACAAG
TTCCTGCCTCTAAAGCAAAGAATTGGTGGCCTAAGTTCCTCCTACCAGCC
GGAGAACGTGGGTTCTGTCTATGTGCACTGCAAGGCTGGTAGGACGCGAA
GTGCCACTTTGGTGGGATGCTACCTCATGATGAAGAACGGATGGACTCCG
GATCAGGCGGTTGACCACATGCGTAAGTGCCGACCGCACATTCTGCTGCA
CACCAAACAATGGGATGCCCTCCGGTTATTCTACACAAACAATGTGGAGA
CGAAATCAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGCATCA
GCACTTGTCGCCTTGCGTATAATATTTGCCCATGTGAAACGGGGGGCGAG
AGTTGTTCATAATTGGCACGTTTAAATCAACTGTTAACCCACCCAGGATG
CTGAAACGAAAAACATATTCTCATAATCTTAGGAATAGCAGTTTCACCGT
AACGCAATCTGCAATATTGGTTGAACTGCGA
UFO08332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plip-RB | 901 | CG10371-RB | 171..778 | 1..608 | 3010 | 99.7 | Plus |
| Plip-RA | 878 | CG10371-RA | 168..755 | 21..608 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23758978..23759295 | 165..482 | 1590 | 100 | Plus |
| 3R | 32079331 | 3R | 23758775..23758918 | 21..164 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 23759357..23759483 | 482..608 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:16:50 has no hits.
UFO08332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:34 Download gff for
UFO08332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 169..776 | 1..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:24 Download gff for
UFO08332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 171..778 | 1..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:29 Download gff for
UFO08332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 171..778 | 1..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:29 Download gff for
UFO08332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23758773..23758918 | 18..164 | 99 | -> | Plus |
| 3R | 23758978..23759295 | 165..482 | 100 | -> | Plus |
| 3R | 23759358..23759483 | 483..608 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:24 Download gff for
UFO08332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19584495..19584640 | 18..164 | 99 | -> | Plus |
| arm_3R | 19584700..19585017 | 165..482 | 100 | -> | Plus |
| arm_3R | 19585080..19585205 | 483..608 | 100 | == | Plus |
