UFO08334.5prime Sequence
1115 bp (981 high quality bases) assembled on 2011-07-23
> UFO08334.5prime
CAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGCTAGCCCTT
AGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGACGATGCGGA
AGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTTCCATAACT
TCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTCAGCCGAAT
CCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGATCTCTTCCG
CCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTCCGGTGAGG
AGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATGGCAGCGGA
GCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGACTCGAAGAA
CGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAAGGTTGAGA
TCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGGTCCGCTTG
GTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAGGGAGTGCA
CACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCACCTCCGCCC
CGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATGATCGCCGC
GAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGACATTGATGA
GCCCAAGTCCACAACACCAACAAACACAAGTTATACAACAAATCTTCACA
CCAGCGCACCCATAGACTCCGAATTCGAAGCTTCCGATATCAGTGAGGAT
ATAGTGGAAACTCAACCGGAAGAGCAAAAGACACCATGGATCAGCTGCAG
CAAATGATGGACCCCTGCGAGAGGAGATCAGACATGAGAAGATTTGGAGC
AGAACACGAGACAGAGTACTTGGAGAGGAAAGAGAAGAGGGCGTGAAGAA
TTCGATTCCTCAGACGATGAGACGGCGAGGCTACCACCTCTTGTTGTGAT
GGAGCGAAACCTCCATGATGAGTGGGCGATTCGATCAGGATCCGGATCGG
AGAGCACGATCGATGGAGATCAGGAATCTGATTGACTTGGAAACGAATCT
TAAACACGAATCGAA
UFO08334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vir-1-RB | 1849 | CG31764-RB | 243..1321 | 9..1075 | 4890 | 97.8 | Plus |
| vir-1-RA | 1765 | CG31764-RA | 159..1237 | 9..1075 | 4890 | 97.8 | Plus |
| vir-1-RG | 1814 | CG31764-RG | 232..1286 | 9..1075 | 4520 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12407185..12407468 | 707..424 | 1420 | 100 | Minus |
| 2L | 23513712 | 2L | 12403813..12404179 | 1062..706 | 1070 | 93.5 | Minus |
| 2L | 23513712 | 2L | 12407548..12407735 | 427..240 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 12409456..12409626 | 240..70 | 855 | 100 | Minus |
| 2L | 23513712 | 2L | 12421641..12421704 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:16:17 has no hits.
UFO08334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:29 Download gff for
UFO08334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RB | 225..1303 | 9..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:11 Download gff for
UFO08334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RA | 159..1237 | 9..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:19 Download gff for
UFO08334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RA | 159..1237 | 9..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:19 Download gff for
UFO08334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12407550..12407734 | 241..425 | 100 | <- | Minus |
| 2L | 12409456..12409623 | 73..240 | 100 | <- | Minus |
| 2L | 12421641..12421704 | 9..72 | 100 | | Minus |
| 2L | 12403798..12404177 | 708..1075 | 93 | <- | Minus |
| 2L | 12407185..12407466 | 426..707 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:11 Download gff for
UFO08334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12403798..12404177 | 708..1075 | 93 | <- | Minus |
| arm_2L | 12407185..12407466 | 426..707 | 100 | <- | Minus |
| arm_2L | 12407550..12407734 | 241..425 | 100 | <- | Minus |
| arm_2L | 12409456..12409623 | 73..240 | 100 | <- | Minus |
| arm_2L | 12421641..12421704 | 9..72 | 100 | | Minus |
