UFO08337.5prime Sequence
1104 bp (995 high quality bases) assembled on 2011-07-23
> UFO08337.5prime
CAGTCGACATGGTAATCTGTGAGATTGAGTTCTGCAATAATTCCCAAGGA
ATTTTTTATGCAGGCCAGTTGATTTCAGGACAGGTGGTCATTAAAACTGA
GAAGGAAAAGTCAGTGAAAGCTGTAATCCTTAACATCAAGGGATATGCCG
AAACCCACTGGGCGGATACCGAACACGATCCGGATGATCAGTCGAATGGT
GAATCATTCAACGGACATGTGGACTACTTGGCCACTAGGGCTTATCTGCA
CGGGTCTAGTTCCAGCATAGAGGTGCTTATTGAGCCTGGCACCAGCTCGT
ATAGATTCGCCTGTCAGTTGCCCATCACATGTCCCTCTTCTTTCGAGGGG
ACACTAGGTCGGATACGTTATCTGGTGAACGTGAGGTTCGTGCGTCCGTG
GAAGTTCGATCTGAACTTTAATCGATGCTTCACTGTGATCAAAGTGATGG
ACCTGAACTCCGAAAGCCTAATGCTGAGGGTACCTAGTCAAGTGGAGTCC
CAGCGAACTTTCTGCTGTTTTCCCTGCCGCTCGTCGCCACTCAGTATGCG
ACTTTCTGTTCCACAGAGTGGTTTTGTGCCAGGACAGATCGTGCCGGTGG
AGGTGATGGTCTCCAATGACAGTGGTGTAGCCGTGGAGGACATAACCGTA
AAACTGACTATGGTGGTGATTTACTACAGTCAACCCCCGTCCGCGGACAC
CAACAAGGACCGTTTTGAGATGGTCCTGAAAACAGGCGGAGGTGTGTCGA
CCAAATGCCGGCAGCAGTTTACCTTCGATCTTAAGGTGCCGCCAACTCCG
CCAACCTGCTTTAATCTATGCAGCATCATTCAGATCGGCTATCAGTGGAA
GCGGAGCCAGAGTTAAAGGTTGTCATGCGGCCAGTCCCTTCACATGCCAT
ACTATTGAAGTGTCCCGCTAACGAAGCAACTCCAAAAGAACAGGACTTTG
GGGGTGAGTTCTGCCACCCAAGCAGCTAGATGCGAAGCTTTGATTTAATG
CCAGCGAACGATGAAGCACTCGAGCCCATTCCTGGGCTGCGATCTCATGC
ACCGGCGAGTTATGCTGAGGCTAAACATCTCCCCGGATCGCAAGTCGATC
TAAA
UFO08337.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18746-RA | 1487 | CG18746-RA | 81..1188 | 9..1089 | 4780 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7788793..7789309 | 987..479 | 2060 | 95.9 | Minus |
| 3R | 32079331 | 3R | 7789456..7789669 | 482..269 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 7789731..7789882 | 270..119 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 7789996..7790107 | 120..9 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:17:09 has no hits.
UFO08337.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:37 Download gff for
UFO08337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18746-RA | 69..1062 | 1..987 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:34 Download gff for
UFO08337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18746-RA | 74..1067 | 1..987 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:35 Download gff for
UFO08337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18746-RA | 74..1067 | 1..987 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:35 Download gff for
UFO08337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7789996..7790111 | 1..120 | 96 | | Minus |
| 3R | 7789459..7789667 | 271..479 | 100 | <- | Minus |
| 3R | 7789731..7789880 | 121..270 | 100 | <- | Minus |
| 3R | 7788793..7789308 | 480..987 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:34 Download gff for
UFO08337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3614515..3615030 | 480..987 | 97 | <- | Minus |
| arm_3R | 3615181..3615389 | 271..479 | 100 | <- | Minus |
| arm_3R | 3615453..3615602 | 121..270 | 100 | <- | Minus |
| arm_3R | 3615718..3615833 | 1..120 | 96 | | Minus |
