Clone UFO08342 Report

Search the DGRC for UFO08342

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:83
Well:42
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptVhaM9.7-b-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08342.5prime Sequence

1070 bp (995 high quality bases) assembled on 2011-07-23

> UFO08342.5prime
CAGTCGACATGGTATCCGAGTGGGTGGCACCAATCGTTATCACCAGCATT
TGGGCCTTCATTGGCATCATCTGCCCCTTCTTCGCCCGAGGACCCAACAG
GGGGGTGACTCAATGCTGCCTGATGCTCACCGCAGCAACTTGCTGGCTGT
TCTGGCTGTGCTGCTACATGACGCAGCTGAACCCCCTCATCGGACCCAAA
CTAAGCATGAACGAAATCATGATCATGGCCCGCGAGTGGGGCAATGAGAT
CAAGGACACCATGGCTGTCACCGTCGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCAC
TCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAA
GGGTGACACTATCCCATATCACCAGCTCACGTCTTTCATTGCCATACGAA
TTCCGGATGAGCATTCATCAGGCGGGCAGATGTGATAAGGCGATAACTTG
TGCTTATTTTCCTTTACGGTCTTTAAAGCCGTAATATTCAGCTGAACGGT
CTTGGTTATAGTACATTGAG

UFO08342.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM9.7-b-RB 1216 CG7625-RB 127..393 9..275 1335 100 Plus
VhaM9.7-b-RA 699 CG7625-RA 127..393 9..275 1335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21540269..21540392 152..275 620 100 Plus
3L 28110227 3L 21539988..21540083 9..104 480 100 Plus
3L 28110227 3L 21540152..21540200 103..151 245 100 Plus
3R 32079331 3R 3580243..3580286 272..229 220 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:17:28 has no hits.

UFO08342.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:40 Download gff for UFO08342.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-b-RA 136..412 1..279 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:42 Download gff for UFO08342.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-b-RA 120..396 1..279 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:41 Download gff for UFO08342.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaM9.7-b-RA 120..396 1..279 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:41 Download gff for UFO08342.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21540153..21540200 104..151 100 -> Plus
3L 21540269..21540392 152..275 100 == Plus
3L 21539981..21540082 1..103 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:42 Download gff for UFO08342.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21533253..21533300 104..151 100 -> Plus
arm_3L 21533369..21533492 152..275 100 == Plus
arm_3L 21533081..21533182 1..103 96 -> Plus