UFO08343.5prime Sequence
1064 bp (948 high quality bases) assembled on 2011-07-23
> UFO08343.5prime
CAGTCGACATGAAAATCCTCTCCCGTCTGGGTCGCCTGATGCGCTACACG
GTGGCCTACGCGGCAATCACACACTGCACCTTCGAGTACATTGGCGATTT
CGTCCTGTGCAAAGGACCCTCCATGGAGCCCACCCTGCACTCGGACAACG
TTCTTCTCACCGAGCGCTTGTCGAAACACTGGCGAACCTACCAGCCCGGC
GACATAGTCATCGCCATATCGCCCATCAAAGCCGATCAGTTCATTTGCAA
GCGTATCGTGGCCGTTTCCGGTGATCAGGTGCTAATCCAGAAGCCCATTC
CCATTGAGGCGGAGTTTAGTGGTAATTCGGATGACAAGAAGAAGCCCGTG
ATGGTCAAGGACTATGTGCCGCGCGGACACGTTTGGATTGAGGGTGACAA
CAAGGGAAACAGCTCGGATTCCCGCTACTACGGACCCATTCCGGTGGGCC
TCATCCGGAGCCGCGTGCTCTGCCGCATCTGGCCGATATCCGAGGCCACG
GGTCTAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATTAATATTTGCCCATGGAGAAAACGGGGG
CGAAGAAGTTGTCCATATTTGTCTACGTTTAAATCAAAACTGGTGAAACT
CCACCCAGGGATTTGCTGAGACGAAAAACATATTCTCATTAACCCTTAAG
AATAGCAGTTTTTCACGTAACCGCACATCTGCGATTATGTGATGAACCTG
CCGAACTCGCTCGT
UFO08343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9240-RA | 907 | CG9240-RA | 169..670 | 5..506 | 2510 | 100 | Plus |
| CG9240-RB | 991 | CG9240-RB | 355..754 | 107..506 | 2000 | 100 | Plus |
| CG9240-RB | 991 | CG9240-RB | 169..271 | 5..107 | 515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15700409..15700812 | 506..103 | 2005 | 99.8 | Minus |
| X | 23542271 | X | 15700989..15701091 | 107..5 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:17:33 has no hits.
UFO08343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:40 Download gff for
UFO08343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9240-RA | 284..788 | 1..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:44 Download gff for
UFO08343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9240-RA | 166..670 | 1..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:44 Download gff for
UFO08343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9240-RA | 166..670 | 1..506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:44 Download gff for
UFO08343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15700989..15701094 | 1..107 | 98 | | Minus |
| X | 15700409..15700807 | 108..506 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:44 Download gff for
UFO08343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15594442..15594840 | 108..506 | 100 | <- | Minus |
| arm_X | 15595022..15595127 | 1..107 | 98 | | Minus |
