UFO08344.5prime Sequence
1180 bp (1055 high quality bases) assembled on 2011-07-23
> UFO08344.5prime
CAGTCGACATGGCGGACGTGGAAATTATGCAAACGGTGCAAACGGAAGTG
AAGAAGACCACGAAAAAGGTTAAGAAGTCGTCGAAGCGACGCGAATCCGA
GGTCCAGATCAGCGAGGTCGAGGTGGATGCCACCATCGAGGAAAGAGGTG
GCGAGTACACAAAAGCCATGGACAAGGACTGGCACTCCGGACACTTCTGC
TGCTGGCAATGCGACGAGAGCCTCACCGGACAGCGTTACGTCATCCGGGA
CGATCATCCGTACTGCATCAAGTGCTACGAGAATGTGTTCGCCAATACGT
GCGAGGAGTGCAACAAGATCATTGGCATCGACTCCAAGGATCTGTCCTAC
AAAGACAAGCACTGGCACGAGGCCTGTTTCCTGTGCTTCAAGTGCCATCT
GTCGCTGGTGGACAAGCAGTTTGGAGCCAAGGCGGATAAGATCTACTGTG
GAAACTGCTACGATGCCCAGTTTGCGTCCCGCTGCGATGGCTGCGGCGAA
GTTTTCCGCGCAGGCACCAAGAAAATGGAGTATAAAACCAGGCAGTGGCA
CGAGAATTGCTTCTGCTGCTGCGTCTGCAAGACGGCCATTGGGACCAAGT
CCTTCATCCCGCGGGAGCAGGAGATCTATTGCGCCGGCTGCTACGAGGAG
AAGTTTGCCACGCGCTGCATCAAGTGCAATAAGGTCATCACCTCGGGAGG
TGTTACCTACAAGAACGAGCCGTGGCATCGCGAGTGCTTCACCTGCACCC
ACTGCAACATCACGCTAGCTGGCCAGCGATTCACCAGCCGCGACGAGAAG
CCCTATTGTGCGGAGTGCTTTGGCGAGCTCTTTGCCAAAAGGTGCACGGC
CTGTGTGAAGCCCATAACAGGCATTGGCGGCACACGCTTCATATCGTTTG
AGGATCGCCACTGGCATCACGACTGCTTTGTGTGTGCCAGCTGCAAGGCT
AGTCTGGTTGGTCGTTGCTTCATCACCGACGGACCCGATATCCTGGTGCC
CGATTGTGCCAAGCAGAAGCTGATGGCAGGCTTTCTTAGACCATTCGTTT
GGGCGCCCGGGCCAAGGTTAAGTGGTCTTAATCCTTATTCATTATCATAT
TCTTATATCCCACCTTAGCTAAGGAAAATCTTGTCATGACTTTGGCCTTT
GTAATTGTCTCAACAATATAAAACGGCCCG
UFO08344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-RC | 2099 | CG32171-RC | 187..1203 | 9..1025 | 5025 | 99.7 | Plus |
Lmpt-RF | 2110 | CG32171-RF | 187..1214 | 9..1025 | 4905 | 98.6 | Plus |
Lmpt-RO | 1894 | CG42679-RO | 121..998 | 148..1025 | 4330 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16912139..16912330 | 148..339 | 960 | 100 | Plus |
3L | 28110227 | 3L | 16921178..16921367 | 682..871 | 950 | 100 | Plus |
3L | 28110227 | 3L | 16913222..16913399 | 337..514 | 890 | 100 | Plus |
3L | 28110227 | 3L | 16920879..16921053 | 511..685 | 875 | 100 | Plus |
3L | 28110227 | 3L | 16921430..16921591 | 864..1025 | 735 | 96.9 | Plus |
3L | 28110227 | 3L | 16911452..16911591 | 9..148 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:17:38 has no hits.
UFO08344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:41 Download gff for
UFO08344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RC | 178..1212 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:46 Download gff for
UFO08344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RC | 179..1213 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:46 Download gff for
UFO08344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RC | 179..1213 | 1..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:46 Download gff for
UFO08344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16911444..16911591 | 1..148 | 97 | -> | Plus |
3L | 16912140..16912329 | 149..338 | 100 | -> | Plus |
3L | 16913224..16913398 | 339..513 | 100 | -> | Plus |
3L | 16920882..16921051 | 514..683 | 100 | -> | Plus |
3L | 16921180..16921366 | 684..870 | 100 | -> | Plus |
3L | 16921437..16921601 | 871..1036 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:46 Download gff for
UFO08344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16904544..16904691 | 1..148 | 97 | -> | Plus |
arm_3L | 16905240..16905429 | 149..338 | 100 | -> | Plus |
arm_3L | 16906324..16906498 | 339..513 | 100 | -> | Plus |
arm_3L | 16913982..16914151 | 514..683 | 100 | -> | Plus |
arm_3L | 16914280..16914466 | 684..870 | 100 | -> | Plus |
arm_3L | 16914537..16914701 | 871..1036 | 95 | | Plus |