Clone UFO08344 Report

Search the DGRC for UFO08344

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:83
Well:44
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptLmpt-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08344.5prime Sequence

1180 bp (1055 high quality bases) assembled on 2011-07-23

> UFO08344.5prime
CAGTCGACATGGCGGACGTGGAAATTATGCAAACGGTGCAAACGGAAGTG
AAGAAGACCACGAAAAAGGTTAAGAAGTCGTCGAAGCGACGCGAATCCGA
GGTCCAGATCAGCGAGGTCGAGGTGGATGCCACCATCGAGGAAAGAGGTG
GCGAGTACACAAAAGCCATGGACAAGGACTGGCACTCCGGACACTTCTGC
TGCTGGCAATGCGACGAGAGCCTCACCGGACAGCGTTACGTCATCCGGGA
CGATCATCCGTACTGCATCAAGTGCTACGAGAATGTGTTCGCCAATACGT
GCGAGGAGTGCAACAAGATCATTGGCATCGACTCCAAGGATCTGTCCTAC
AAAGACAAGCACTGGCACGAGGCCTGTTTCCTGTGCTTCAAGTGCCATCT
GTCGCTGGTGGACAAGCAGTTTGGAGCCAAGGCGGATAAGATCTACTGTG
GAAACTGCTACGATGCCCAGTTTGCGTCCCGCTGCGATGGCTGCGGCGAA
GTTTTCCGCGCAGGCACCAAGAAAATGGAGTATAAAACCAGGCAGTGGCA
CGAGAATTGCTTCTGCTGCTGCGTCTGCAAGACGGCCATTGGGACCAAGT
CCTTCATCCCGCGGGAGCAGGAGATCTATTGCGCCGGCTGCTACGAGGAG
AAGTTTGCCACGCGCTGCATCAAGTGCAATAAGGTCATCACCTCGGGAGG
TGTTACCTACAAGAACGAGCCGTGGCATCGCGAGTGCTTCACCTGCACCC
ACTGCAACATCACGCTAGCTGGCCAGCGATTCACCAGCCGCGACGAGAAG
CCCTATTGTGCGGAGTGCTTTGGCGAGCTCTTTGCCAAAAGGTGCACGGC
CTGTGTGAAGCCCATAACAGGCATTGGCGGCACACGCTTCATATCGTTTG
AGGATCGCCACTGGCATCACGACTGCTTTGTGTGTGCCAGCTGCAAGGCT
AGTCTGGTTGGTCGTTGCTTCATCACCGACGGACCCGATATCCTGGTGCC
CGATTGTGCCAAGCAGAAGCTGATGGCAGGCTTTCTTAGACCATTCGTTT
GGGCGCCCGGGCCAAGGTTAAGTGGTCTTAATCCTTATTCATTATCATAT
TCTTATATCCCACCTTAGCTAAGGAAAATCTTGTCATGACTTTGGCCTTT
GTAATTGTCTCAACAATATAAAACGGCCCG

UFO08344.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RC 2099 CG32171-RC 187..1203 9..1025 5025 99.7 Plus
Lmpt-RF 2110 CG32171-RF 187..1214 9..1025 4905 98.6 Plus
Lmpt-RO 1894 CG42679-RO 121..998 148..1025 4330 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16912139..16912330 148..339 960 100 Plus
3L 28110227 3L 16921178..16921367 682..871 950 100 Plus
3L 28110227 3L 16913222..16913399 337..514 890 100 Plus
3L 28110227 3L 16920879..16921053 511..685 875 100 Plus
3L 28110227 3L 16921430..16921591 864..1025 735 96.9 Plus
3L 28110227 3L 16911452..16911591 9..148 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:17:38 has no hits.

UFO08344.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:41 Download gff for UFO08344.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RC 178..1212 1..1036 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:46 Download gff for UFO08344.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RC 179..1213 1..1036 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:46 Download gff for UFO08344.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RC 179..1213 1..1036 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:46 Download gff for UFO08344.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16911444..16911591 1..148 97 -> Plus
3L 16912140..16912329 149..338 100 -> Plus
3L 16913224..16913398 339..513 100 -> Plus
3L 16920882..16921051 514..683 100 -> Plus
3L 16921180..16921366 684..870 100 -> Plus
3L 16921437..16921601 871..1036 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:46 Download gff for UFO08344.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16904544..16904691 1..148 97 -> Plus
arm_3L 16905240..16905429 149..338 100 -> Plus
arm_3L 16906324..16906498 339..513 100 -> Plus
arm_3L 16913982..16914151 514..683 100 -> Plus
arm_3L 16914280..16914466 684..870 100 -> Plus
arm_3L 16914537..16914701 871..1036 95   Plus