Clone UFO08345 Report

Search the DGRC for UFO08345

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:83
Well:45
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptTwdlB-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08345.5prime Sequence

1110 bp (1013 high quality bases) assembled on 2011-07-23

> UFO08345.5prime
CAGTCGACATGCGCGCATTCATTGTCCTGTGTTTGGTGGCAGTCACCTGC
GCCGATAAGCTCGGCTACAACTACCAGCCCGTTGGCCACTCCAGCTCCGG
ACTGTCCTTCGCTCCTGGCAGCGGCTCTATCAGTGGTGGATCTATTGGAG
GAGGCTCCATCGGAGGAGGTTCTATTGGAGGAGGCTCTATTGGAGGAGGC
CTCATTGGTGGTGGCTCTATCGGAGGAGGAAGCATCGGAGGTGGATCCCT
TGGTGGTTCCATCGGTGGTGGCTCCATCGATTCCGGTCTTGGCGGTCTTG
GTGGACTCGGTGGTCTAGGAGGTGGCGACGCTCTGGCCGCTCCAGTCTCC
TACAACGCCCCCGCTCCCGCTGCTGAGCTCCAGAAGGAATTCTTCACCTA
CTCCGCCAACGAGCAGGACTTCGATGAGCCACAAGAACTGGAGCGTGTTG
CTGGATCCGTAAACAAGGGACTGCGCGTTGTCTTCATCAAGGGACCCGAG
AACCGTGGTCTGGAGAACGCTGCCCTGGCCCTCGCCAAGCAGGCTGCCCA
GCAGGAGACCGCCATCTATGTCCTGAACAAGCAGGCTGATATTGGAGATC
TTGCCCAGAAACTGAACGCCATCCGCAACAACAACAACAACAAGCCCGAG
GTGCACTTCGTCAAGTACCGCACTCCCGAGGATGCTGCCAACGCCCAGCG
CGCCATCCAGGGTCAGTACGACCAGCTGGGAGGATCCTCTCAGCTCATGA
TGGTGGTGTTGCACCCGCCCTGAACTTCGCCTCCGCTGGACCCGTCCAGA
AGGCTAACGCCCAGATCCCCGACAACGCCTACCTGCCCACTTCTGTGTTC
CGTCGTCTGCGTTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGAGATCTGGTCATGACTAGTGCTTGGAATCCCACAATAAAAAACG
CCGGCGGCAACCGAGCGTTCTGAACAATTCCGATGGGTTCTGAGGTCATA
CTGGATTCTATCACAGGATTCAAGCGAGCTCGATATAAATAGGCCGCCTG
CACTCTATGC

UFO08345.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlB-RA 1025 CG6478-RA 48..905 9..865 4265 99.9 Plus
TwdlL-RA 1002 CG6447-RA 51..900 9..857 3355 93.1 Plus
TwdlL-RB 1066 CG6447-RB 140..964 34..857 3320 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26622571..26623413 865..24 4165 99.9 Minus
3R 32079331 3R 26624689..26625513 857..34 3295 93.6 Minus
3R 32079331 3R 26632323..26632849 338..863 1700 88.6 Plus
3R 32079331 3R 26619592..26620103 345..855 1580 87.7 Plus
3R 32079331 3R 26630220..26630621 384..784 1150 86.3 Plus
3R 32079331 3R 26628051..26628458 784..378 1135 85.8 Minus
3R 32079331 3R 26634088..26634452 375..739 850 82.2 Plus
3R 32079331 3R 26626108..26626448 795..456 815 83.3 Minus
3R 32079331 3R 26619263..26619462 28..227 445 81.5 Plus
3R 32079331 3R 26620800..26621063 737..474 435 77.7 Minus
3R 32079331 3R 26631931..26632046 9..124 385 88.8 Plus
3R 32079331 3R 26656956..26657063 483..590 300 85.2 Plus
3R 32079331 3R 26640530..26640720 534..724 295 77 Plus
Blast to na_te.dros performed 2014-11-27 00:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7802..7847 110..155 113 71.7 Plus

UFO08345.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:42 Download gff for UFO08345.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlB-RA 53..910 9..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:49 Download gff for UFO08345.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlB-RA 48..905 9..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:48 Download gff for UFO08345.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlB-RA 48..905 9..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:48 Download gff for UFO08345.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26622571..26623413 24..865 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:49 Download gff for UFO08345.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22448293..22449135 24..865 99 <- Minus