UFO08345.5prime Sequence
1110 bp (1013 high quality bases) assembled on 2011-07-23
> UFO08345.5prime
CAGTCGACATGCGCGCATTCATTGTCCTGTGTTTGGTGGCAGTCACCTGC
GCCGATAAGCTCGGCTACAACTACCAGCCCGTTGGCCACTCCAGCTCCGG
ACTGTCCTTCGCTCCTGGCAGCGGCTCTATCAGTGGTGGATCTATTGGAG
GAGGCTCCATCGGAGGAGGTTCTATTGGAGGAGGCTCTATTGGAGGAGGC
CTCATTGGTGGTGGCTCTATCGGAGGAGGAAGCATCGGAGGTGGATCCCT
TGGTGGTTCCATCGGTGGTGGCTCCATCGATTCCGGTCTTGGCGGTCTTG
GTGGACTCGGTGGTCTAGGAGGTGGCGACGCTCTGGCCGCTCCAGTCTCC
TACAACGCCCCCGCTCCCGCTGCTGAGCTCCAGAAGGAATTCTTCACCTA
CTCCGCCAACGAGCAGGACTTCGATGAGCCACAAGAACTGGAGCGTGTTG
CTGGATCCGTAAACAAGGGACTGCGCGTTGTCTTCATCAAGGGACCCGAG
AACCGTGGTCTGGAGAACGCTGCCCTGGCCCTCGCCAAGCAGGCTGCCCA
GCAGGAGACCGCCATCTATGTCCTGAACAAGCAGGCTGATATTGGAGATC
TTGCCCAGAAACTGAACGCCATCCGCAACAACAACAACAACAAGCCCGAG
GTGCACTTCGTCAAGTACCGCACTCCCGAGGATGCTGCCAACGCCCAGCG
CGCCATCCAGGGTCAGTACGACCAGCTGGGAGGATCCTCTCAGCTCATGA
TGGTGGTGTTGCACCCGCCCTGAACTTCGCCTCCGCTGGACCCGTCCAGA
AGGCTAACGCCCAGATCCCCGACAACGCCTACCTGCCCACTTCTGTGTTC
CGTCGTCTGCGTTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGAGATCTGGTCATGACTAGTGCTTGGAATCCCACAATAAAAAACG
CCGGCGGCAACCGAGCGTTCTGAACAATTCCGATGGGTTCTGAGGTCATA
CTGGATTCTATCACAGGATTCAAGCGAGCTCGATATAAATAGGCCGCCTG
CACTCTATGC
UFO08345.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlB-RA | 1025 | CG6478-RA | 48..905 | 9..865 | 4265 | 99.9 | Plus |
TwdlL-RA | 1002 | CG6447-RA | 51..900 | 9..857 | 3355 | 93.1 | Plus |
TwdlL-RB | 1066 | CG6447-RB | 140..964 | 34..857 | 3320 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26622571..26623413 | 865..24 | 4165 | 99.9 | Minus |
3R | 32079331 | 3R | 26624689..26625513 | 857..34 | 3295 | 93.6 | Minus |
3R | 32079331 | 3R | 26632323..26632849 | 338..863 | 1700 | 88.6 | Plus |
3R | 32079331 | 3R | 26619592..26620103 | 345..855 | 1580 | 87.7 | Plus |
3R | 32079331 | 3R | 26630220..26630621 | 384..784 | 1150 | 86.3 | Plus |
3R | 32079331 | 3R | 26628051..26628458 | 784..378 | 1135 | 85.8 | Minus |
3R | 32079331 | 3R | 26634088..26634452 | 375..739 | 850 | 82.2 | Plus |
3R | 32079331 | 3R | 26626108..26626448 | 795..456 | 815 | 83.3 | Minus |
3R | 32079331 | 3R | 26619263..26619462 | 28..227 | 445 | 81.5 | Plus |
3R | 32079331 | 3R | 26620800..26621063 | 737..474 | 435 | 77.7 | Minus |
3R | 32079331 | 3R | 26631931..26632046 | 9..124 | 385 | 88.8 | Plus |
3R | 32079331 | 3R | 26656956..26657063 | 483..590 | 300 | 85.2 | Plus |
3R | 32079331 | 3R | 26640530..26640720 | 534..724 | 295 | 77 | Plus |
Blast to na_te.dros performed 2014-11-27 00:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7802..7847 | 110..155 | 113 | 71.7 | Plus |
UFO08345.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:42 Download gff for
UFO08345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlB-RA | 53..910 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:49 Download gff for
UFO08345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlB-RA | 48..905 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:48 Download gff for
UFO08345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlB-RA | 48..905 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:48 Download gff for
UFO08345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26622571..26623413 | 24..865 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:49 Download gff for
UFO08345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22448293..22449135 | 24..865 | 99 | <- | Minus |