UFO08346.5prime Sequence
1132 bp (1028 high quality bases) assembled on 2011-07-23
> UFO08346.5prime
CAGTCGACATGAAGTTCTCTCTGGGTTTGTTAGTCCTCTTTTTGGGCGCC
ACTCTTGTGGCTGCCGAACAGGATTACGAGGGTTACCGCATCTATGAGGT
GATTCCATCGACTGCCGACCAGGCTGACCTTTTGCACCAACTAAGTCTGC
AGGGATACGATTTCATCAGTGAGACTCGTCTATTGGGTCATCCTTCTCGT
GTGATTGTGAGTCCCGCTCAGTTGAAGCACTTCCAGCAGCTGGTTGAGGC
AGAGAAAATGACACTTACTCTGGTGAACTCCAACCTGGGCGCCTCCATAG
CCGAGGAGTTTGCCCAGCGACAGATGCAGCGCCTTTTGGCGCCCATCACG
GGAAAGGGTCGCTTGAGCACGGAGCGCTACTATACGCACGAGGAGATTAT
CAACTATATCGATGACCTGGCCCAGCGTTTTCCCAGCCGAGTCTTCGTTA
AGACCGTTGGCTGGTCCTATGAACAGCGAGTCCTGAAAACCATCACCATC
ACCAATGGCGATGGCAAGGCTAACAAGAAAGTGATCTTCATGGATGGTGG
TTTCCATGCTAGGGAATGGATTTCTCCAGCAGCAGTCCTCTACGTCATCG
ATCAATTGGTGGAGCAGTTCGAGGAGAACGCTCATCTGCTGAAGGACTAC
GACTGGGTCATCCTGCCACTGGTCAATGCCGATGGCTATGAGCACACCCA
GACCGGAACACTTGCTCGAATGTGGCGCAAAACCCGTCAGCCATACACGT
ACGCTGGACAGACGTGTTACGGAGCTGATCCCAACCGGAATTTCGACTTC
CATTGGAACGAGGAGGGCGCCTCCTCGAATCCATGTGCGGACACCTATGC
TGGACCGACGGCCTTTTCCGAACCGGAGACGATTACCGTCCGGGATCTGA
TGCACTCACTGGCCGATCGGGGAATTATGTACCTCACCCTCCACTCCTAC
GGCAACTATCTGCTTGTATCCATGGGGATGGACGTCGATTCTGCCGAAGA
ATTGGGGAGGATCTGGATGCGGTAGCCCGGACTTGGAGCTTGAGGCATTG
AAAACCGCCACTGATACAGGGTTACACTATTGGATTCTCACAAATGTCCT
GATATTGCTGCGCTGAAACCAGTGAATGACAA
UFO08346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8562-RA | 1483 | CG8562-RA | 21..1120 | 9..1111 | 5095 | 98.1 | Plus |
| CG18417-RA | 1480 | CG18417-RA | 509..760 | 483..734 | 335 | 77 | Plus |
| CG8560-RB | 1334 | CG8560-RB | 524..726 | 489..691 | 310 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7398463..7399367 | 82..987 | 4480 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7398305..7398378 | 9..82 | 370 | 100 | Plus |
| 3L | 28110227 | 3L | 7403007..7403209 | 691..489 | 310 | 76.8 | Minus |
| 3L | 28110227 | 3L | 7400633..7400851 | 483..701 | 300 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:16:55 has no hits.
UFO08346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:35 Download gff for
UFO08346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8562-RA | 9..1036 | 1..1029 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:27 Download gff for
UFO08346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8562-RA | 12..1039 | 1..1029 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:31 Download gff for
UFO08346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8562-RA | 12..1039 | 1..1029 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:31 Download gff for
UFO08346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7398296..7398378 | 1..82 | 95 | -> | Plus |
| 3L | 7398464..7399366 | 83..986 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:27 Download gff for
UFO08346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7391396..7391478 | 1..82 | 95 | -> | Plus |
| arm_3L | 7391564..7392466 | 83..986 | 99 | -> | Plus |
