Clone UFO08347 Report

Search the DGRC for UFO08347

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:83
Well:47
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRpL34a-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08347.5prime Sequence

952 bp (813 high quality bases) assembled on 2011-07-23

> UFO08347.5prime
CAGTCGACATGGTCCAACGCTTGACTCTGAGACGACGTCTGTCGTACAAC
ACCCGCTCCAACAAGAGGCGCATTGTGCGCACTCCCGGAGGCCGTCTGGT
GTACCAGTACGTGAAGAAGAACCCCACTGTGCCACGCTGTGGTCAGTGCA
AGGAGAAACTCCACGGGATCACCCCCTCCCGGCCCAGCGAGCGTCCCAGG
ATGTCCAAGCGTTTGAAGACCGTCTCCAGGACCTACGGAGGTGTCCTGTG
CCACAGCTGCCTGCGAGAGAGAATCGTCCGCGCTTTCCTCATCGAAGAGC
AGAAGATCGTCAAGGCTCTGAAGAGCCAGCGCGAGGCTTTGGTCAAGCCC
GTCAAGAAGGTTGTGGAGAAGAAGCCGGTGAAGGCTGCCGCCAAGAAGCC
CGCGGGAAAGGCAGCCGGAAAGCTTTTGTGCCAAAGTCGCCGGCAAGAAG
CCCGCTCCCAAGGGCGCTCCTAAAGGAGTCGTCAAGTCCAAGAAGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCGACATGGAGCCATCA
CAAACGGCATGATGACTGATCGCAGCGGCATCAGCACTGTCGCTTGCGTA
TATATTTGCCATGTGAACGGGGCGAGAGTGTCATATTGCACGTTATCAAC
TGTGAACTCACCCATGAATGCTGAAACGAAAACATATTTCTCATATCCGT
AA

UFO08347.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34a-RC 603 CG6090-RC 41..526 9..495 2365 99.2 Plus
RpL34a-RB 621 CG6090-RB 59..544 9..495 2365 99.2 Plus
RpL34a-RA 606 CG6090-RA 44..529 9..495 2365 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26058497..26058917 495..74 2015 99.1 Minus
3R 32079331 3R 9400596..9400878 356..74 830 86.2 Minus
3R 32079331 3R 26058980..26059044 73..9 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:16:59 has no hits.

UFO08347.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:36 Download gff for UFO08347.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL34a-RC 41..534 9..504 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:30 Download gff for UFO08347.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL34a-RA 44..537 9..504 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:32 Download gff for UFO08347.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL34a-RA 44..537 9..504 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:32 Download gff for UFO08347.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26058488..26058917 74..504 98 <- Minus
3R 26058980..26059044 9..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:30 Download gff for UFO08347.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21884210..21884639 74..504 98 <- Minus
arm_3R 21884702..21884766 9..73 100   Minus