UFO08347.5prime Sequence
952 bp (813 high quality bases) assembled on 2011-07-23
> UFO08347.5prime
CAGTCGACATGGTCCAACGCTTGACTCTGAGACGACGTCTGTCGTACAAC
ACCCGCTCCAACAAGAGGCGCATTGTGCGCACTCCCGGAGGCCGTCTGGT
GTACCAGTACGTGAAGAAGAACCCCACTGTGCCACGCTGTGGTCAGTGCA
AGGAGAAACTCCACGGGATCACCCCCTCCCGGCCCAGCGAGCGTCCCAGG
ATGTCCAAGCGTTTGAAGACCGTCTCCAGGACCTACGGAGGTGTCCTGTG
CCACAGCTGCCTGCGAGAGAGAATCGTCCGCGCTTTCCTCATCGAAGAGC
AGAAGATCGTCAAGGCTCTGAAGAGCCAGCGCGAGGCTTTGGTCAAGCCC
GTCAAGAAGGTTGTGGAGAAGAAGCCGGTGAAGGCTGCCGCCAAGAAGCC
CGCGGGAAAGGCAGCCGGAAAGCTTTTGTGCCAAAGTCGCCGGCAAGAAG
CCCGCTCCCAAGGGCGCTCCTAAAGGAGTCGTCAAGTCCAAGAAGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCGACATGGAGCCATCA
CAAACGGCATGATGACTGATCGCAGCGGCATCAGCACTGTCGCTTGCGTA
TATATTTGCCATGTGAACGGGGCGAGAGTGTCATATTGCACGTTATCAAC
TGTGAACTCACCCATGAATGCTGAAACGAAAACATATTTCTCATATCCGT
AA
UFO08347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL34a-RC | 603 | CG6090-RC | 41..526 | 9..495 | 2365 | 99.2 | Plus |
RpL34a-RB | 621 | CG6090-RB | 59..544 | 9..495 | 2365 | 99.2 | Plus |
RpL34a-RA | 606 | CG6090-RA | 44..529 | 9..495 | 2365 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26058497..26058917 | 495..74 | 2015 | 99.1 | Minus |
3R | 32079331 | 3R | 9400596..9400878 | 356..74 | 830 | 86.2 | Minus |
3R | 32079331 | 3R | 26058980..26059044 | 73..9 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:16:59 has no hits.
UFO08347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:36 Download gff for
UFO08347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34a-RC | 41..534 | 9..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:30 Download gff for
UFO08347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34a-RA | 44..537 | 9..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:32 Download gff for
UFO08347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL34a-RA | 44..537 | 9..504 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:32 Download gff for
UFO08347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26058488..26058917 | 74..504 | 98 | <- | Minus |
3R | 26058980..26059044 | 9..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:30 Download gff for
UFO08347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21884210..21884639 | 74..504 | 98 | <- | Minus |
arm_3R | 21884702..21884766 | 9..73 | 100 | | Minus |