UFO08348.5prime Sequence
1110 bp (990 high quality bases) assembled on 2011-07-23
> UFO08348.5prime
CAGTCGACATGAAAACACTGGAGAAATATATCCTATTCGCCATCGTGCTC
TGCTGCCTGCTGCAATTGGGCCAGGCGATCAAATGTTGGGACTGTCGCAG
CGATAACGATCCCAAATGCGGGGATCCTTTTGACAACAGCACGCTGGCCA
TCACCGATTGCCAACAGGCGCCGGAGCTGGAGCATCTGAAGGGCGTGCGA
CCGACAATGTGTCGCAAGATCCGGCAGAAGGTGCACGGTGAATGGCGCTA
CTTTCGCAGCTGCGCCTACATGGGCGAGCCGGGCATCGAGGGCGACGAAC
GCTTCTGCCTGATGCGCACTGGCAGCTACAACATCTTCATGGAGTTCTGC
ACGTGCAACAGCAAGGACGGCTGCAACTCGGCGGGCATCCATAGGCTAGG
ACTGATGGGCGTCCTAACTGGCACACTGCTCTCGGTGATTGTGGCTCATC
TTCTGCGGCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAA
CTCACCCAGGGATTGGCTGAGACGAAAAACATATTTCTCAATAAACCCTT
TAGGAAATAGCCAGCTTTTCACCGTAACACGCCACATCTTGGCGAATATA
TGTGTTAGAAACTGCCGGAAATCGTGTGGTATCACTCCGAGCGATGAAAA
CGGTTTCAGTGCTCATGAAACGTGTAACAGGTGAAACCAATTCCCATATA
CCAGCCTCAC
UFO08348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crok-RA | 1033 | CG17218-RA | 90..542 | 9..461 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12173208..12173600 | 69..461 | 1965 | 100 | Plus |
| 2L | 23513712 | 2L | 12173070..12173131 | 9..70 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:17:04 has no hits.
UFO08348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:36 Download gff for
UFO08348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crok-RA | 87..539 | 9..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:32 Download gff for
UFO08348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crok-RA | 90..542 | 9..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:34 Download gff for
UFO08348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crok-RA | 90..542 | 9..461 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:34 Download gff for
UFO08348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12173209..12173600 | 70..461 | 100 | == | Plus |
| 2L | 12173070..12173130 | 9..69 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:32 Download gff for
UFO08348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12173070..12173130 | 9..69 | 100 | -> | Plus |
| arm_2L | 12173209..12173600 | 70..461 | 100 | == | Plus |
