UFO08350.5prime Sequence
1129 bp (1011 high quality bases) assembled on 2011-07-23
> UFO08350.5prime
CAGTCGACATGGCAGAAACCACTGGTGTGCAAATAAAACTGGAACAGCAA
AACATCAAGGAGCGCCTGAATCTGCACGTCAAGCGGCGCCTGCAGCAGGA
TGCGGATAATCCCGCCGAGAGTCCCGAATTGCTGCCCACCGATGCGAATG
CCAAGCGCAGCAAGACGAAAGATGTCTCAAAACCAAGAAAACCCTACCAA
AAACGGACAGAAAAACCGAAAACAGAGGCGACCAAGTGCAAGAAAGTTGG
ACAATTGGGCAGTCCGGCGGGTGAAGTGGATCCAATGGATGACCAGGAGA
CGGAAGGCTTTTCCCCGGAGGCGCCGGATGGCAAATCCGCCAGACGGGAT
TGCTGCAAAAATGCCGACATCCTCAACATAGTTTTGAACGCTAAGAAACG
TAGTTTAATGCAGGATCCTGAAGTTCAGGCCTTCTGGACCGAAATAACCA
ATTGCATAAAGGGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAACCCTT
TAGGGAAATAGCCAGGTTTCACGTACACGCCAATCTGCGAATATATGTGT
AGAACTGCCGGAATCGTGTGCTATCACTCCAGAGCGATGAAAACGTTCAG
TGGCTCATGAAACGGGTGTAACAAGGTGAACCTATCATATCACAAGCTCA
CTGGCTCATGCACGAATTCCGCATGACAT
UFO08350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13339-RA | 662 | CG13339-RA | 61..527 | 7..472 | 2295 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13824918..13825157 | 7..246 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 13825209..13825428 | 245..464 | 1100 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:18:02 has no hits.
UFO08350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:44 Download gff for
UFO08350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13339-RA | 22..499 | 1..478 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:57 Download gff for
UFO08350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13339-RA | 56..533 | 1..478 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:56 Download gff for
UFO08350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13339-RA | 56..533 | 1..478 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:56 Download gff for
UFO08350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13824913..13825157 | 1..246 | 98 | -> | Plus |
| 2R | 13825211..13825428 | 247..464 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:57 Download gff for
UFO08350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9712418..9712662 | 1..246 | 98 | -> | Plus |
| arm_2R | 9712716..9712933 | 247..464 | 100 | == | Plus |
