UFO08352.5prime Sequence
1149 bp (1037 high quality bases) assembled on 2011-07-23
> UFO08352.5prime
CAGTCGACATGGCCAAACATCATCCGGATTTGATTTTCTGCCGCAAGCAG
CCCGGCGTGGCCATTGGACGCCTGTGTGAAAAAGACGATGGAAAGTGTGT
GATCTGCGACTCCTACGTGCGGCCATGCACACTGGTGCGGATCTGCGACG
AGTGCAACTACGGATCCTACCAGGGCAGGTGCGTCATCTGTGGAGGACCC
GGAGTGTCGGATGCCTACTACTGCAAGTCCTGCACCATTCAGGAAAAGGA
CCGCGACGGATGCCCCAAGATTGTAAATCTAGGCAGCTCCAAGACTGACC
TGTTCTACGAACGCAAGAAATATGGCTTCAAACAGAACTATGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGA
GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGGTTT
TCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAA
TCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATG
GAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACAGCTCACGTCT
TTCATTGCATACGAATTCCCGATGACATCATCAGGCGGCAGATGTGATAA
GGCGGAATAAACTGGGCCTAATTTTTCTACGTCTTAAAAGGGCCGTAATT
TCAACTGACGGCCTGTTATAGTACATTGGAGCCACTGAACGCAAGCCCT
UFO08352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9548-RA | 483 | CG9548-RA | 86..419 | 8..341 | 1670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6490439..6490630 | 251..60 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 6490288..6490373 | 337..252 | 430 | 100 | Minus |
| 2L | 23513712 | 2L | 6490706..6490758 | 60..8 | 265 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 910..977 | 123 | 68.1 | Plus |
UFO08352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:45 Download gff for
UFO08352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9548-RA | 71..413 | 8..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:01 Download gff for
UFO08352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9548-RA | 86..428 | 8..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:58 Download gff for
UFO08352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9548-RA | 86..428 | 8..352 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:58 Download gff for
UFO08352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6490288..6490373 | 252..337 | 100 | <- | Minus |
| 2L | 6490439..6490629 | 61..251 | 100 | <- | Minus |
| 2L | 6490706..6490758 | 8..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:01 Download gff for
UFO08352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6490288..6490373 | 252..337 | 100 | <- | Minus |
| arm_2L | 6490439..6490629 | 61..251 | 100 | <- | Minus |
| arm_2L | 6490706..6490758 | 8..60 | 100 | | Minus |
