UFO08357.5prime Sequence
1122 bp (1003 high quality bases) assembled on 2011-07-23
> UFO08357.5prime
CAGTCGACATGATTGCTAGTTCAAAAATGTTACTTTCTGCATCGATCCTA
ATATATTTCTTGCTGAATCTGCAATCTTCGAGTGCTGAGATTGCCGACTG
CAGTTTCTATGATACCGTTGATATCTCGGAAGGCCAGAGGCTCTCGAATG
GATCATACCTCTACGAGGGATTACTTATTCCCGCCCATTTGACGGCCAAG
TATGAATTCAAGCTTCTGGCGAATGGAGATAAGGAGCAGGTGCCAAGTCA
CGTGAGAGGATGTGTGTGCAAGCTAAGGACTTGCGTCAGGTTTTGCTGCC
CACATGACCACATAATGGATATGGGCGAATGCTACGCCAACATGACGACG
GAGGAGAACGAATTACTGGACCCCATGCTAAATGTGACCCTGGACGACGG
ATCAGTGGTGCAAAGGCACTATAAGAAGGAGCTCATGGTGCAGTGGGATC
TGCCAAAGCCCTGCGATGATATGTTTTACCTAGACAACCGGGATATAATG
GATGAGTACACCTTGTTCGAGAATGGAAGATTGCTGCGCCACTACGATCA
AGTGTATTTGGACAAGTCGGAGTACTGTCTGCAGCACCGAACATTCGGCG
AAGGTAACAACAACTCCATTCGCATTATACCCCACAACTGCTTGATACTG
CCATCCAGAACGGGACAGACCGTTGTGATGATCACATCGTTGATATGCTT
GGTTCTTACCATCGCCGTGTACCTGTGCGTTAAGAAGCTAATGAATTTGG
AGGGCAAGTGTTTCATCTGTTACATGATGTGCCTATTTTTCGGATACCTG
TTCCTACTCCTTGATCTGTGGGAGTTATCGCTCGATTTCTGTAAAGCAGC
AGGTTTCTTGGGATACTTTTTCGTCATGGCTGCGTTCTTTTGGCTATCTA
TCATCAGTCGGCACTATTGGAAATGTCTTACCAATCCCTGTGCTCGATGA
ACATTCGGTCAAGACGTGCGTTTCTGCTAATCAGCTGCTTCGCCTGGGCA
ATGCCTTTGGCCTTGAACGGGAGTCACCTATCTGGCTGAATAACGTTGTG
GACACGAGGAAGTGGCAGCCTCGCGGTGGGGCGACAAGGCAATGCTGATC
TATATACTAAAAGCTGGTCTGC
UFO08357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl2-RB | 2035 | CG17795-RB | 105..1216 | 9..1122 | 5200 | 98.3 | Plus |
| mth-RE | 2420 | CG6936-RE | 817..1508 | 231..922 | 790 | 75.2 | Plus |
| mth-RB | 1882 | CG6936-RB | 364..1055 | 231..922 | 790 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5604894..5605406 | 9..521 | 2565 | 100 | Plus |
| 3L | 28110227 | 3L | 5605685..5605865 | 675..855 | 905 | 100 | Plus |
| 3L | 28110227 | 3L | 5605920..5606144 | 850..1075 | 820 | 93.8 | Plus |
| 3L | 28110227 | 3L | 5605468..5605623 | 520..675 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 345375..345665 | 521..231 | 330 | 74.2 | Minus |
| 2R | 25286936 | 2R | 17446960..17447119 | 301..142 | 230 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:18:25 has no hits.
UFO08357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:47 Download gff for
UFO08357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl2-RB | 107..1218 | 9..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:07 Download gff for
UFO08357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl2-RB | 105..1216 | 9..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:02 Download gff for
UFO08357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl2-RB | 105..1216 | 9..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:02 Download gff for
UFO08357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5605923..5606178 | 853..1106 | 92 | -> | Plus |
| 3L | 5606239..5606254 | 1107..1122 | 100 | | Plus |
| 3L | 5604894..5605406 | 9..521 | 100 | -> | Plus |
| 3L | 5605470..5605623 | 522..675 | 100 | -> | Plus |
| 3L | 5605686..5605862 | 676..852 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:07 Download gff for
UFO08357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5597994..5598506 | 9..521 | 100 | -> | Plus |
| arm_3L | 5598570..5598723 | 522..675 | 100 | -> | Plus |
| arm_3L | 5598786..5598962 | 676..852 | 100 | -> | Plus |
| arm_3L | 5599023..5599278 | 853..1106 | 92 | -> | Plus |
| arm_3L | 5599339..5599354 | 1107..1122 | 100 | | Plus |
