UFO08360.5prime Sequence
562 bp (411 high quality bases) assembled on 2011-07-23
> UFO08360.5prime
CAGTCGACATGTCGGAGGCCTATTCGAATTCCATACGCAGCCTGAGTCCA
GAGCTGGCCAAAAAGGCGCACGACGAGCTGGGAGAGATACCCGACAGAAT
CGATGAGGATATCGAAACGTTGCGCACTTGGATCTCCAAGCAACCTCATC
TCAAGGCTCGCCAGGATGCCCAGTTCCTGGTCGCCTTCCTGCGTGGCTGC
AAATACAGCTTGGAGAAAACCAAACTCAAGTTGGACAACTTCTATGCGAT
GAGGGGAGCCGTGCCCGAGCTCTACAAGAATCGCATTGTGGGTGAGAAGC
AGCTCAGCATTCTGGACACAGGTTGCCTCCTCCGATTGCCGCAGCCACTG
CAGGCTGATGGTCCTCGCATCCACATCTCCCGCTACGGTCAATACGACTC
GAAGAAGTACTCCATTGCCGGGTGTTGGTTCAGGTAAACAACGATGCTCG
GGCGAGATTTCAGATTAGGGAAGACGACATGGCTAATGATAATCCGGCTT
TGTTGGAGAATCATCGACAATGAAGGGGGCGTTTGGGGGCAGGTCACCTA
TTTCCAGTTTCG
UFO08360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12926-RA | 1347 | CG12926-RA | 185..720 | 9..559 | 2325 | 96.4 | Plus |
| CG30339-RA | 1023 | CG30339-RA | 154..263 | 136..245 | 235 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9609096..9609409 | 322..9 | 1570 | 100 | Minus |
| 2R | 25286936 | 2R | 9608886..9609038 | 479..322 | 500 | 93.7 | Minus |
| 2R | 25286936 | 2R | 9602639..9602748 | 245..136 | 235 | 80.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:17:57 has no hits.
UFO08360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:43 Download gff for
UFO08360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12926-RA | 174..719 | 1..562 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:12:55 Download gff for
UFO08360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12926-RA | 177..722 | 1..562 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:55 Download gff for
UFO08360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12926-RA | 177..722 | 1..562 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:55 Download gff for
UFO08360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9608814..9609037 | 323..562 | 91 | <- | Minus |
| 2R | 9609096..9609413 | 1..322 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:12:55 Download gff for
UFO08360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5496319..5496542 | 323..562 | 91 | <- | Minus |
| arm_2R | 5496601..5496918 | 1..322 | 98 | | Minus |
