UFO08361.5prime Sequence
1122 bp (1012 high quality bases) assembled on 2011-07-23
> UFO08361.5prime
CAGTCGACATGCTCGAGAACTGTCAGCGTCACCACATGCTCCTTGGACTA
GGAGCCCTAACGATGGTCACCATACTCGTCCTGTTCGTGGAATCTCGTTA
CGCGGCAGATGGTCCTCGTCGCCGAGAGCCGCAATTCGTGATCGAGGACA
ACTCGACCTGCTGGCGGAATGAGAAGTACACGATGGTGCAGGAGTGCCAC
CCGTGCTCCGAATTCGATATAGTCAGCCGGAGCTTGGGCGTCTGCATTCA
CACGCACTACAAGGAGGTGCTGCGCTGCCAGAGCGGCGAGATCGTAACCA
GGAGCTGCGACCGGGTGGCGCTCATCGAGCAAATGAACTTCTTGAAATTT
GAGGTCTCGTGCTTTGTAATCGGATTACTTAGCTACCTGGTCAGTTATGC
CCGCGATCGAGTCCTGTCCAGGCGCAACTACATGAGAATCGAGCGACAGC
TAAACCGGGTCCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTTCTCAATAAACC
CTTTAGGGAAATAGGCCAGGTTTTCACGTACACGCCACATCTGCGAATAT
TATGTTGTAGAACTGCGAATCGTCGGGTATTCACTCCAGAGCCGAATGAA
AAACGGTTCAGTTTGCCTCATGGAAACGTGTTACCAGGGGTGAAACCTAT
CCAATATCACAGTCACGGCTTC
UFO08361.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| JTBR-RC | 799 | CG1935-RC | 114..569 | 9..464 | 2280 | 100 | Plus |
| JTBR-RB | 789 | CG1935-RB | 104..559 | 9..464 | 2280 | 100 | Plus |
| JTBR-RA | 849 | CG1935-RA | 164..619 | 9..464 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1802238..1802693 | 464..9 | 2280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:18:46 has no hits.
UFO08361.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:50 Download gff for
UFO08361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JTBR-RA | 135..602 | 1..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:15 Download gff for
UFO08361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JTBR-RA | 156..623 | 1..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:07 Download gff for
UFO08361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JTBR-RA | 156..623 | 1..470 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:07 Download gff for
UFO08361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1802238..1802697 | 1..464 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:15 Download gff for
UFO08361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1802238..1802697 | 1..464 | 99 | | Minus |
