UFO08363.5prime Sequence
1144 bp (1016 high quality bases) assembled on 2011-07-23
> UFO08363.5prime
CAGTCGACATGTCGTATCAACTGTACCGCAACACCACGCTCGGCAACACC
CTGCAGGAGAGCCTCGACGAGCTGATTCAGTACGGCCAGATTACGCCCGG
ACTGGCTTTCAAGGTTCTGCTGCAATTCGACAAGAGCATCAACAATGCCC
TAAACCAGCGGGTCAAGGCCCGCGTCACCTTCAAGGCTGGAAAACTAAAC
ACCTACCGCTTCTGCGACAATGTCTGGACTCTCATGCTTAACGATGTGGA
GTTCCGCGAAGTGCACGAGATCGTCAAGGTGGACAAGGTGAAGATCGTGG
CCTGCGACGGCAAGAGCGGCGAGTTCGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAA
TCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATT
CTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCA
CATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCAC
TCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAG
GTGACACTATCCCATATCACAGCTCCACCGTCTTTCATTGCATACGAAAT
CCGATGACATTCATCAGCGCAGATGGTGATAAGCCGATAAACTTGTGCTT
ATTTTTTTACGTCTTAAAAGCCGTAATATTCGCTGACGTCTGGTATAGTC
ATTGACACTGACTGAATGGCCACAAGTTCTTTACATGCCATTGG
UFO08363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIA-S-RA | 617 | CG5163-RA | 106..423 | 9..326 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23890582..23890830 | 326..78 | 1245 | 100 | Minus |
| 3R | 32079331 | 3R | 23890884..23890955 | 80..9 | 360 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..290 | 892..952 | 133 | 72.6 | Plus |
UFO08363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:51 Download gff for
UFO08363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-S-RA | 94..423 | 1..330 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:21 Download gff for
UFO08363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-S-RA | 98..427 | 1..330 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:13 Download gff for
UFO08363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-S-RA | 98..427 | 1..330 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:13 Download gff for
UFO08363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23890582..23890827 | 81..326 | 100 | <- | Minus |
| 3R | 23890884..23890963 | 1..80 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:21 Download gff for
UFO08363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19716304..19716549 | 81..326 | 100 | <- | Minus |
| arm_3R | 19716606..19716685 | 1..80 | 96 | | Minus |
