UFO08368.5prime Sequence
1109 bp (1005 high quality bases) assembled on 2011-07-23
> UFO08368.5prime
CAGTCGACATGTCGCAGGTATCAACCCTCATCGATGTGGACAAGCCACTC
TTCGATCTCAGCACCTTCGCTGGGCGCTTCCAGTACTTCGCCTGGATGAC
GGACCCCCGCACCGTAGTCGTATCCAGCGATCGCCTGCTGGAAGCCAAAG
CAATGGTTGAACGCTACCGGAAAGGTGACCAATCCCCGCCGCTGAAGCCG
GAGGAGGTGCACTACAACATGAAGCTGTACAACTCAGCCTTTCATCCGGA
TACCGGCGAGCTGCAGAACTTTTGCGGCCGCATGAGTTTTCAGGTACCCG
GAGGCATGTTGATCACCGGTGGCATGCTGGCCTTCTATCGCACCGTGCCC
GCCGTGGTGCTCTGGCAGTTCATCAACCAGTCCTTCAATGCGGTTGTTAA
CTACACGAATCGCAATGCCAACTCGCCAACTAGCGTTACGCAGCTGGGCG
TGGCCTATGTATCCGCCACGACATCGGCTCTGGTAGCTGCTATTGGATGC
AAGAACTATTGGTCAAAGAAAGCGACTCCGCTGTTCCAAAGATTTGTGCC
CTTCGCAGCTGTGGCGGCAGCCAACTTCGTGAACATTCCGCTGATGCGAC
AAAATGAGATAATCAATGGCATAGAGGTGAAGAACGACGATGGAGTGGTT
GTGGGCCAGAGTAGATTGGCAGCCATCAAAGGAATCGGTGAGGTGGTTGT
GTCCAGGATTGCGATGGCGGCGCCCGGAATGCTGGTGCTGCCATTGATAA
TGGAGAGGCTGGAGAAACTGCCTGCCTACAGGCGCATCAAGTGGATTAAT
GCTCCATTCCAGACCCTTTTGGTTGGGTGCTTCCTTTGCTTCATGGTGCC
CACTGCCTGCGCCCTGTTCCCACAGCAGTGTTCCTTGACACTTCGATTAT
GCGCACCTTCGAGCCCGACTTTACGAGACCTCGAGAGAAACTCAGGCAAA
GTGCCCAAGCGTGTCTACTTCACAAGGTCTGGCAGCTTTCTAGACATTCG
TTTGGCGCCGCGGGTCAAGTAGTGGTCATATCATATCATATCATAATTCT
AATCCCACTAGCTAGAGAATTCTTGTCCATGACATAGCCTGATTCCACAA
TAAACGCCG
UFO08368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6812-RA | 2062 | CG6812-RA | 537..1512 | 9..977 | 4705 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19064840..19065383 | 289..832 | 2720 | 100 | Plus |
| 3L | 28110227 | 3L | 19064327..19064596 | 25..294 | 1350 | 100 | Plus |
| 3L | 28110227 | 3L | 19065450..19065595 | 833..972 | 450 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:19:09 has no hits.
UFO08368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:53 Download gff for
UFO08368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6812-RA | 522..1514 | 1..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:28 Download gff for
UFO08368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6812-RA | 529..1521 | 1..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:19 Download gff for
UFO08368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6812-RA | 529..1521 | 1..985 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:19 Download gff for
UFO08368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19064327..19064595 | 25..293 | 100 | -> | Plus |
| 3L | 19064845..19065383 | 294..832 | 100 | -> | Plus |
| 3L | 19065450..19065610 | 833..985 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:28 Download gff for
UFO08368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19057427..19057695 | 25..293 | 100 | -> | Plus |
| arm_3L | 19058550..19058710 | 833..985 | 93 | == | Plus |
| arm_3L | 19057945..19058483 | 294..832 | 100 | -> | Plus |
