UFO08369.5prime Sequence
1123 bp (1005 high quality bases) assembled on 2011-07-23
> UFO08369.5prime
CAGTCGACATGGCCTGCTTGAGCACTTCCGGTCGCGTCGTGTGCGGCTCG
CGTCGCCAGCAGGCGCACAAGCTGCTCTATCAGCTCTTCGGATCCCGGCC
AGGATATACAGCCCCGTCCGCCGCAACCGGATTATTCAGTCCGCCCAAAG
TTCAACAGCAGGCCATGCGACTCTACCACGGATTAAGCTTCAGCATGGGC
AAGGATTACCCCGATCTGCTGCAAAGTCCCCACAAGTGCAGCCAATCGCT
GCAGTACTCGCAAAGTTCCAAGGCGAATCTGAGGCAGCACAGCTCGGTCC
ACACACAACAGCCAGCAGGTCCTGTGAGGGAGTTCCAGATCGATCCCTAC
ATCATACTCGATGACGACCTCAAGTACTTCTACGACGATGTGCGATATCT
GCTGAAATCGGGCACATCCCAGCCAGAGTTGGACACCATTGCCAGCTATT
ACTTCGATGGCCAGGGCAAGGCTCTGCGACCCATGGTTACCATGCTGATG
GCCAAGGCGATAAACTATCACCTGAACAACGAGTCACACCAATTAGTACA
CAAACAGCGACAGATCGCCCTCTTTTCGGAGATGGTGCACTCGGCCAGTC
TGGTCCACGACGATGTCATCGATCAGTCGGACTTCCGACGCGGCAAGCCC
AGCGTGAATGCTCTGTGGAACCACAAGAAGGTCACAATGGCTGGTGATTA
CATCTTATCGATTGCCTCGATTATGATAGCTCGTCTGCGCAGCGATGATG
TGACGATCGTGCTGAGTCAGATCTTGACCGATTTGGTCCAAGGCGAGTTC
ATGCAGCTGGGCTCAAGGGAAACGGAGAACGAGCGCTTCGCCCATTATCT
GACCAAGACATACAGGAAGACCGCATCGCTGATCGCCAATGCACTGAAGG
CGACCGCCGTGATTGCCCAGGCCGACGACACGTGGCCGAGGTGGTCTTCC
AGTACGGACGCACATCGGCTTGGCCTTTCAGCTGGTCGACGACATGCTGG
ACTTTGTTCTCCTTCCACGACAGATGGGCAAGCCGACGGCGGCGGATTGA
GCTGGGTCTTGCACCGCCTCCCGTCCCCTTTGCATGCAGAAGTTACCACC
TGATTCCATGGTGGATGGCGGCC
UFO08369.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qless-RB | 2784 | CG31005-RB | 281..1370 | 9..1093 | 5145 | 98.7 | Plus |
| qless-RA | 3218 | CG31005-RA | 715..1804 | 9..1093 | 5145 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31251682..31251894 | 221..9 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 31242598..31242779 | 398..217 | 895 | 99.5 | Minus |
| 3R | 32079331 | 3R | 31241633..31241776 | 682..539 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 31242171..31242310 | 538..399 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 31238353..31238487 | 902..768 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 31237974..31238163 | 1087..902 | 525 | 91.1 | Minus |
| 3R | 32079331 | 3R | 31240992..31241083 | 770..679 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Helitron | 564 | Helitron HELITRON1_DM 564bp | 186..233 | 672..719 | 114 | 70.8 | Plus |
UFO08369.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:54 Download gff for
UFO08369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31005-RA | 705..1807 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:29 Download gff for
UFO08369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qless-RA | 709..1811 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:21 Download gff for
UFO08369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qless-RA | 709..1811 | 1..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:21 Download gff for
UFO08369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31251682..31251900 | 1..221 | 98 | | Minus |
| 3R | 31237968..31238162 | 903..1092 | 92 | <- | Minus |
| 3R | 31238353..31238484 | 771..902 | 100 | <- | Minus |
| 3R | 31240992..31241081 | 681..770 | 100 | <- | Minus |
| 3R | 31241635..31241776 | 539..680 | 100 | <- | Minus |
| 3R | 31242171..31242310 | 399..538 | 100 | <- | Minus |
| 3R | 31242598..31242774 | 222..398 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:29 Download gff for
UFO08369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27063690..27063884 | 903..1092 | 92 | <- | Minus |
| arm_3R | 27064075..27064206 | 771..902 | 100 | <- | Minus |
| arm_3R | 27066714..27066803 | 681..770 | 100 | <- | Minus |
| arm_3R | 27067357..27067498 | 539..680 | 100 | <- | Minus |
| arm_3R | 27067893..27068032 | 399..538 | 100 | <- | Minus |
| arm_3R | 27068320..27068496 | 222..398 | 100 | <- | Minus |
| arm_3R | 27077404..27077622 | 1..221 | 98 | | Minus |
