UFO08370.5prime Sequence
1134 bp (1016 high quality bases) assembled on 2011-07-23
> UFO08370.5prime
CAGTCGACATGGATCTGCCAATTGGAAAGTTAAACGGACTGCTAAAGATG
CAAATATTCCTCCTGCAATTGTTGCTTTTCGTTTCGCCGGCATTGTTGCA
GCAGCCACATGTCTTTTACCATCCAAGACAATTGTATTACGATTCACCGC
GTCTTCGTCGCTTTGAGTATGGTGCCGCTGCCACGCCCATTGTGGGCGGC
TATAGTCCGGCTCCTCCGCCGGCGATTCACTTTCAGCAGCAGACGCCACA
CTTTCAGCTGATTAACTATCGGCCGAGTTATCAGCCCTTGGGCTTGGATT
ACCAGCAGCAGCAGTTGCCCGCTCCTGCCGCACCCCCTCCGCCCCTGTAT
CCGCAGCAGAGTGTCCAGTACCAGCAGCGGACCATCGCTCCACACGCCGA
TTTGGCCAAATATCGATATGAAGATTGCAGGAGCAGCAGCAGCAGCAACC
CTCACAGAATGTCCAAACGGAAAGACCCAGGAGGTACGCCAAGGATCTGG
ACACGGATGTGGCCGAAACCAGAAGTCCAGCTGACCGAAGTGCCAAGGAA
ACCAAGTACTTTCATGACATTTTCATGCGCTTTGATGCACCCGATTCGCG
GAGTCATGGCCACGTCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
AGCGCATCAGCACCTTGTCGCTTGCGTATAATATTTGCCCATGTGAAACG
GGGCGAAGAAGTTGTTCATATTGCACGTTAAATCAAACTGTGAAACTCAC
CAGATGCTGAACGAAAACATATTCTCATTAACTTAAGAATAGCAGGTACG
TAACGCAATCTGCAATATTGTGAACTGCGGAATC
UFO08370.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13305-RC | 1138 | CG13305-RC | 293..901 | 9..617 | 3045 | 100 | Plus |
| CG13305-RB | 1364 | CG13305-RB | 293..707 | 9..423 | 2075 | 100 | Plus |
| CG13305-RB | 1364 | CG13305-RB | 932..1127 | 422..617 | 980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8646116..8646530 | 423..9 | 2075 | 100 | Minus |
| 3L | 28110227 | 3L | 8645749..8645891 | 564..422 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 8645236..8645288 | 617..565 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:18:31 has no hits.
UFO08370.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:48 Download gff for
UFO08370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13305-RC | 282..903 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:09 Download gff for
UFO08370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13305-RC | 286..907 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:03 Download gff for
UFO08370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13305-RC | 286..907 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:03 Download gff for
UFO08370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8645749..8645889 | 424..564 | 100 | <- | Minus |
| 3L | 8645230..8645288 | 565..623 | 96 | <- | Minus |
| 3L | 8646116..8646534 | 1..423 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:09 Download gff for
UFO08370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8638330..8638388 | 565..623 | 96 | <- | Minus |
| arm_3L | 8638849..8638989 | 424..564 | 100 | <- | Minus |
| arm_3L | 8639216..8639634 | 1..423 | 99 | | Minus |
